The Loci of repeated evolution: a catalog of genetic hotspots of phenotypic variation. (Q51531906)

6 April 2018

title

The Loci of repeated evolution: a catalog of genetic hotspots of phenotypic variation. (English)

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6 April 2018

author name string

Arnaud Martin

series ordinal

1

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6 April 2018

Virginie Orgogozo

series ordinal

2

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6 April 2018

publication date

21 March 2013

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6 April 2018

number of pages

16

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based on heuristic

inferred from page(s)

published in

Evolution

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6 April 2018

volume

67

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6 April 2018

page(s)

1235-1250

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6 April 2018

issue

5

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6 April 2018

FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster

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Composite effects of polymorphisms near multiple regulatory elements create a major-effect QTL

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Evo-devo and constraints on selection

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Substitutions in woolly mammoth hemoglobin confer biochemical properties adaptive for cold tolerance

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Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer

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C4 Photosynthesis evolved in grasses via parallel adaptive genetic changes.

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Causes and evolutionary significance of genetic convergence.

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Adaptive evolution of C(4) photosynthesis through recurrent lateral gene transfer.

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Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles

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The probability of genetic parallelism and convergence in natural populations.

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Genotypic evolution of azole resistance mechanisms in sequential Candida albicans isolates

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Parallel signatures of sequence evolution among hearing genes in echolocating mammals: an emerging model of genetic convergence

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Molecular ecology and adaptation of visual photopigments in craniates.

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First dairying in green Saharan Africa in the fifth millennium BC.

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De novo genesis of enhancers in vertebrates

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Identification of a variant associated with adult-type hypolactasia

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Identification of the yellow skin gene reveals a hybrid origin of the domestic chicken

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A natural history of FUT2 polymorphism in humans.

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Morphological evolution caused by many subtle-effect substitutions in regulatory DNA.

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Conserved regulatory architecture underlies parallel genetic changes and convergent phenotypic evolution

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Parallel genetic changes and nonparallel gene-environment interactions characterize the evolution of drug resistance in yeast

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The causes of repeated genetic evolution

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Convergent evolution of a reproductive trait through distinct developmental mechanisms in Drosophila

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The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast

21 January 2018

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Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition

21 January 2018

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How repeatable are associations between polymorphisms in achaete-scute and bristle number variation in Drosophila?

21 January 2018

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Quantitative variation and selection of esterase gene amplification in Culex pipiens.

21 January 2018

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Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4.

21 January 2018

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Amplification of DNA from preserved specimens shows blowflies were preadapted for the rapid evolution of insecticide resistance.

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Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

21 January 2018

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Pleiotropic scaling and QTL data

21 January 2018

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Wing patterning gene redefines the mimetic history of Heliconius butterflies

21 January 2018

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Natural variation in Pristionchus pacificus insect pheromone attraction involves the protein kinase EGL-4.

21 January 2018

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Balancing selection at the tomato RCR3 Guardee gene family maintains variation in strength of pathogen defense

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Gold nuggets: supergene or hypogene?

21 January 2018

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Epistasis dominates the genetic architecture of Drosophila quantitative traits

21 January 2018

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Molecular evolution of trichromacy in primates

21 January 2018

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Ancient polymorphism reveals unidirectional breeding system shifts

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The evolution of gene regulation underlies a morphological difference between two Drosophila sister species.

21 January 2018

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The genomic basis of adaptive evolution in threespine sticklebacks

21 January 2018

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Genome-wide analysis of the world's sheep breeds reveals high levels of historic mixture and strong recent selection

21 January 2018

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Regulatory genes control a key morphological and ecological trait transferred between species

21 January 2018

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Reverse evolution of armor plates in the threespine stickleback

21 January 2018

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Constraints on utilization of the EDA-signaling pathway in threespine stickleback evolution.

21 January 2018

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Metamodels and phylogenetic replication: a systematic approach to the evolution of developmental pathways

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The origin and evolution of fragrance in rice (Oryza sativa L.).

21 January 2018

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Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape

21 January 2018

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TFCONES: a database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements

21 January 2018

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T-13910 DNA variant associated with lactase persistence interacts with Oct-1 and stimulates lactase promoter activity in vitro

21 January 2018

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Contrasting genetic paths to morphological and physiological evolution

21 January 2018

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Evolution of shape by multiple regulatory changes to a growth gene

21 January 2018

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Ancient polymorphism and functional variation in the primate MHC-DQA1 5' cis-regulatory region

21 January 2018

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Small- and large-effect quantitative trait locus interactions underlie variation in yeast sporulation efficiency

21 January 2018

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Convergence, adaptation, and constraint

21 January 2018

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Positively selected G6PD-Mahidol mutation reduces Plasmodium vivax density in Southeast Asians

21 January 2018

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Birth, decay, and reconstruction of an ancient TRIMCyp gene fusion in primate genomes

21 January 2018

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Hybridization as an invasion of the genome

21 January 2018

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The developmental role of Agouti in color pattern evolution.

21 January 2018

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Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

21 January 2018

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Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand

21 January 2018

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Parallel evolution in the major haemoglobin genes of eight species of Andean waterfowl.

21 January 2018

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Morphological evolution through multiple cis-regulatory mutations at a single gene.

21 January 2018

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Natural polymorphism affecting learning and memory in Drosophila

21 January 2018

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Lateral transfer of genes from fungi underlies carotenoid production in aphids

21 January 2018

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Reverse evolution in RH1 for adaptation of cichlids to water depth in Lake Tanganyika.

21 January 2018

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The new mutation theory of phenotypic evolution

21 January 2018

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Balancing selection and the evolution of functional polymorphism in Old World monkey TRIM5alpha

21 January 2018

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Aristostomias scintillans (Malacosteidae): a deep-sea fish with visual pigments apparently adapted to its own bioluminescence

21 January 2018

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The genetic theory of adaptation: a brief history

21 January 2018

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Natural behavior polymorphism due to a cGMP-dependent protein kinase of Drosophila

21 January 2018

1 reference

Genomic hotspots of adaptation in butterfly wing pattern evolution.

21 January 2018

1 reference

Adaptive introgression across species boundaries in Heliconius butterflies.

21 January 2018

1 reference

Cellular effects and epistasis among three determinants of adaptation in experimental populations of Saccharomyces cerevisiae.

21 January 2018

1 reference

Convergence and Parallelism in Evolution: A Neo-Gouldian Account

21 January 2018

1 reference

Soft sweeps III: the signature of positive selection from recurrent mutation

21 January 2018

1 reference

Diet and the evolution of human amylase gene copy number variation

21 January 2018

1 reference

Human-specific gain of function in a developmental enhancer

21 January 2018

1 reference

Genetic analysis of cavefish reveals molecular convergence in the evolution of albinism

21 January 2018

1 reference

Genetic basis of eye and pigment loss in the cave crustacean, Asellus aquaticus

21 January 2018

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Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population

21 January 2018

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Evolution of the tan locus contributed to pigment loss in Drosophila santomea: a response to Matute et al.

21 January 2018

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Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences

21 January 2018

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optix drives the repeated convergent evolution of butterfly wing pattern mimicry.

21 January 2018

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Developmental biology: hotspots for evolution.

21 January 2018

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Craniofacial divergence and ongoing adaptation via the hedgehog pathway

21 January 2018

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The QTN program and the alleles that matter for evolution: all that's gold does not glitter

21 January 2018

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Identical skin toxins by convergent molecular adaptation in frogs

21 January 2018

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Duplication of fgfr1 permits Fgf signaling to serve as a target for selection during domestication

21 January 2018

1 reference

Lateral gene transfer between prokaryotes and multicellular eukaryotes: ongoing and significant?

21 January 2018

1 reference

Natural variation in the Pto disease resistance gene within species of wild tomato (Lycopersicon). II. Population genetics of Pto.

21 January 2018

1 reference

Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica

21 January 2018

1 reference

Natural variants of AtHKT1 enhance Na+ accumulation in two wild populations of Arabidopsis

21 January 2018

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Insights into hominid evolution from the gorilla genome sequence

21 January 2018

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21 January 2018

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The ABO blood group is a trans-species polymorphism in primates

21 January 2018

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The five AhMTP1 zinc transporters undergo different evolutionary fates towards adaptive evolution to zinc tolerance in Arabidopsis halleri

21 January 2018

1 reference

The genetic architecture of skeletal convergence and sex determination in ninespine sticklebacks

21 January 2018

1 reference

Parallel evolution of auditory genes for echolocation in bats and toothed whales

21 January 2018

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Rapid evolution of sex pheromone-producing enzyme expression in Drosophila

21 January 2018

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Adaptive introgression of anticoagulant rodent poison resistance by hybridization between old world mice

21 January 2018

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Regulation of flowering time: all roads lead to Rome.

21 January 2018

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Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis.

21 January 2018

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Perspective: Evolutionary developmental biology and the problem of variation

21 January 2018

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The loci of evolution: how predictable is genetic evolution?

21 January 2018

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Is genetic evolution predictable?

21 January 2018

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Population genetics, pleiotropy, and the preferential fixation of mutations during adaptive evolution.

21 January 2018

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Regulatory evolution of shavenbaby/ovo underlies multiple cases of morphological parallelism.

21 January 2018

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Evolutionary implications of horizontal gene transfer

21 January 2018

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Genetic basis of spectral tuning in the violet-sensitive visual pigment of African clawed frog, Xenopus laevis

21 January 2018

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Allele-specific KRT1 expression is a complex trait

21 January 2018

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The molecular diversity of adaptive convergence.

21 January 2018

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The molecular basis of an avian plumage polymorphism in the wild: a melanocortin-1-receptor point mutation is perfectly associated with the melanic plumage morph of the bananaquit, Coereba flaveola

21 January 2018

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Genome-wide association study indicates two novel resistance loci for severe malaria

21 January 2018

1 reference

Haplotype diversity and linkage disequilibrium at human G6PD: recent origin of alleles that confer malarial resistance

21 January 2018

1 reference

Convergent adaptation of human lactase persistence in Africa and Europe

21 January 2018

1 reference

Evolutionary paths to antibiotic resistance under dynamically sustained drug selection

21 January 2018

1 reference

Evolutionary view of acyl-CoA diacylglycerol acyltransferase (DGAT), a key enzyme in neutral lipid biosynthesis.

21 January 2018

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Elevated expression of TcHMA3 plays a key role in the extreme Cd tolerance in a Cd-hyperaccumulating ecotype of Thlaspi caerulescens.

21 January 2018

1 reference

Preservation of genes involved in sterol metabolism in cholesterol auxotrophs: facts and hypotheses

21 January 2018

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Homoplasy: from detecting pattern to determining process and mechanism of evolution.

21 January 2018

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Intraspecific polymorphism to interspecific divergence: genetics of pigmentation in Drosophila.

21 January 2018

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Parallel genotypic adaptation: when evolution repeats itself

21 January 2018

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Evidence for balancing selection operating at the het-c heterokaryon incompatibility locus in a group of filamentous fungi

21 January 2018

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Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrates

21 January 2018

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Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome

21 January 2018

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A phenylalanine in DGAT is a key determinant of oil content and composition in maize

21 January 2018

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Genetic changes associated with floral adaptation restrict future evolutionary potential

21 January 2018

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The mystery of missing heritability: Genetic interactions create phantom heritability

21 January 2018

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Lost along the way: the significance of evolution in reverse

21 January 2018

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21 January 2018

Identifiers

DOI

10.1111/EVO.12081

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6 April 2018

PubMed ID

23617905

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6 April 2018