High-Throughput DNA sequencing of ancient wood. (Q50056664)

24 February 2018

title

High-Throughput DNA sequencing of ancient wood. (English)

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24 February 2018

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35

Ludovic Orlando

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Mikkel Schubert

4

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Xavier Terradas

Xavier Terradas

31

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Christophe Plomion

Christophe Plomion

33

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Antoine Kremer

Antoine Kremer

34

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Willy Tegel

30

Willy Tegel

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14

Katarina Čufar

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Frédérique Eynaud

15

Frédérique Eynaud

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André Billamboz

23

André Billamboz

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Thibault Leroy

5

Thibault Leroy

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Frédéric Lagane

2

Frédéric Lagane

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Emilie Chancerel

7

Emilie Chancerel

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author name string

Stefanie Wagner

1

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Andaine Seguin-Orlando

3

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Erwan Guichoux

6

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Inger Bech-Hebelstrup

8

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Vincent Bernard

9

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Cyrille Billard

10

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Yves Billaud

11

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Matthias Bolliger

12

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Christophe Croutsch

13

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Karl Uwe Heussner

16

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Joachim Köninger

17

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Fabien Langenegger

18

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Frédéric Leroy

19

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Christine Lima

20

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Nicoletta Martinelli

21

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Garry Momber

22

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Oliver Nelle

24

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Antoni Palomo

25

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Raquel Piqué

26

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Marianne Ramstein

27

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Roswitha Schweichel

28

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Harald Stäuble

29

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Florence Verdin

32

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24 February 2018

language of work or name

English

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publication date

7 February 2018

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24 February 2018

published in

Molecular Ecology

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24 February 2018

Improved recovery of ancient DNA from subfossil wood - application to the world's oldest Late Glacial pine forest

volume

27

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page(s)

1138-1154

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issue

5

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cites work

1 reference

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26 August 2018

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26 August 2018

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26 August 2018

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Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens

26 August 2018

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26 August 2018

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Contesting the presence of wheat in the British Isles 8,000 years ago by assessing ancient DNA authenticity from low-coverage data

26 August 2018

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Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing

26 August 2018

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Methanogenic degradation of lignin-derived monoaromatic compounds by microbial enrichments from rice paddy field soil

26 August 2018

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Optimal Ancient DNA Yields from the Inner Ear Part of the Human Petrous Bone

26 August 2018

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Reconstructing ancient genomes and epigenomes

26 August 2018

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Within-range translocations and their consequences in European larch

26 August 2018

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Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

26 August 2018

1 reference

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Archaeology. Sedimentary DNA from a submerged site reveals wheat in the British Isles 8000 years ago.

26 August 2018

1 reference

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Introduction of chemically labile substructures into Arabidopsis lignin through the use of LigD, the Cα-dehydrogenase from Sphingobium sp. strain SYK-6.

26 August 2018

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Adaptation, migration or extirpation: climate change outcomes for tree populations

26 August 2018

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Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX.

26 August 2018

1 reference

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The genome of a Late Pleistocene human from a Clovis burial site in western Montana

26 August 2018

1 reference

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Fifty thousand years of Arctic vegetation and megafaunal diet

26 August 2018

1 reference

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Long livestock farming history and human landscape shaping revealed by lake sediment DNA.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Optimization of DNA recovery and amplification from non-carbonized archaeobotanical remains

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Evolutionary and plastic responses to climate change in terrestrial plant populations

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Cellulose degradation by one mesophilic strain Caulobacter sp. FMC1 under both aerobic and anaerobic conditions.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Early Neolithic water wells reveal the world's oldest wood architecture

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Choosing the best plant for the job: a cost-effective assay to prescreen ancient plant remains destined for shotgun sequencing

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Metagenomic microbial community profiling using unique clade-specific marker genes

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Improving ancient DNA read mapping against modern reference genomes

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Fast gapped-read alignment with Bowtie 2

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Glacial survival of boreal trees in northern Scandinavia

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Metagenomic biomarker discovery and explanation

26 August 2018

1 reference

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Towards the onset of fruit tree growing north of the Alps: ancient DNA from waterlogged apple (Malus sp.) seed fragments.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Two highly validated multiplexes (12-plex and 8-plex) for species delimitation and parentage analysis in oaks (Quercus spp.).

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

2500 years of European climate variability and human susceptibility

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Illumina sequencing library preparation for highly multiplexed target capture and sequencing

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

A multidisciplinary study of archaeological grape seeds

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

The Sequence Alignment/Map format and SAMtools

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Genetic consequences of glacial survival and postglacial colonization in Norway spruce: combined analysis of mitochondrial DNA and fossil pollen.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Damage and degradation rates of extracellular DNA in marine sediments: implications for the preservation of gene sequences

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Patterns of damage in genomic DNA sequences from a Neandertal

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Authenticated DNA from ancient wood remains

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Aerobic and Anaerobic Catabolism of Vanillic Acid and Some Other Methoxy-Aromatic Compounds by Pseudomonas sp. Strain PN-1

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Ancient DNA from pollen: a genetic record of population history in Scots pine.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

The thermal history of human fossils and the likelihood of successful DNA amplification

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Nuclear gene sequences and DNA variation of Cryptomeria japonica samples from the postglacial period.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Novel perspectives in wood certification and forensics: dry wood as a source of DNA

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

26 August 2018

Wood formation in trees.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

The rbcL gene sequence from chestnut indicates a slow rate of evolution in the Fagaceae

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Anaerobic and aerobic metabolism of diverse aromatic compounds by the photosynthetic bacterium Rhodopseudomonas palustris

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896730

Species status of hybridizing oaks

30 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29412519

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The survival of organic matter in bone: a review

1 reference

27 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1111/1475-4754.T01-1-00071

Identifiers

DOI

10.1111/MEC.14514

1 reference

24 February 2018

0 references

1 reference

24 February 2018