SHARP: genome-scale identification of gene-protein-reaction associations in cyanobacteria (Q47705537)

5 February 2018

title

SHARP: genome-scale identification of gene-protein-reaction associations in cyanobacteria (English)

1 reference

5 February 2018

1 reference

S Krishnakumar

1

1 reference

5 February 2018

Dilip A Durai

series ordinal

2

1 reference

5 February 2018

Pramod P Wangikar

series ordinal

3

1 reference

5 February 2018

Ganesh A Viswanathan

series ordinal

4

1 reference

5 February 2018

publication date

24 August 2013

1 reference

5 February 2018

published in

Photosynthesis Research

1 reference

5 February 2018

volume

118

1 reference

5 February 2018

issue

1-2

1 reference

5 February 2018

page(s)

181-190

1 reference

5 February 2018

https://scigraph.springernature.com/pub.10.1007/s11120-013-9910-6

exact match

0 references

cites work

The public road to high-quality curated biological pathways

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

The RAST Server: rapid annotations using subsystems technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Only plant-type (GLYK) glycerate kinases produce d-glycerate 3-phosphate

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Pathway databases and tools for their exploitation: benefits, current limitations and challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Context-specific metabolic networks are consistent with experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

MetaCyc: a multiorganism database of metabolic pathways and enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

A nuclear magnetic resonance based approach to accurate functional annotation of putative enzymes in the methanogen Methanosarcina acetivorans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Ongoing and future developments at the Universal Protein Resource

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Computational tools for metabolic engineering.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Engineering cyanobacteria to generate high-value products

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Prediction of metabolic pathways from genome-scale metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Reconstruction of biochemical networks in microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Mixotrophic and photoheterotrophic metabolism in Cyanothece sp. ATCC 51142 under continuous light

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Reconstructing the metabolic network of a bacterium from its genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Missing in action: enzyme functional annotations in biological databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

KEGG: kyoto encyclopedia of genes and genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Solving the Problem: Genome Annotation Standards before the Data Deluge

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

The metabolic network of Synechocystis sp. PCC 6803: systemic properties of autotrophic growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Rhythm of carbon and nitrogen fixation in unicellular cyanobacteria under turbulent and highly aerobic conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Optimization based automated curation of metabolic reconstructions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Metabolic engineering of cyanobacteria for 1-butanol production from carbon dioxide

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

ATP drives direct photosynthetic production of 1-butanol in cyanobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Engineering a platform for photosynthetic isoprene production in cyanobacteria, using Synechocystis as the model organism

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

CINPER: an interactive web system for pathway prediction for prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

CDD: specific functional annotation with the Conserved Domain Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

CDD: a Conserved Domain Database for the functional annotation of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

A global analysis of adaptive evolution of operons in cyanobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

KAAS: an automatic genome annotation and pathway reconstruction server

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Experimental validation of novel genes predicted in the un-annotated regions of the Arabidopsis genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

KEGG: Kyoto Encyclopedia of Genes and Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Annotation of bacterial and archaeal genomes: improving accuracy and consistency

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Microbial engineering for the production of advanced biofuels

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Global probabilistic annotation of metabolic networks enables enzyme discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

The second wave of synthetic biology: from modules to systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Renewable energy from Cyanobacteria: energy production optimization by metabolic pathway engineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

A large-scale evaluation of computational protein function prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Towards multidimensional genome annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Reconstruction and comparison of the metabolic potential of cyanobacteria Cyanothece sp. ATCC 51142 and Synechocystis sp. PCC 6803

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Database resources of the National Center for Biotechnology Information

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

BRENDA, the enzyme information system in 2011

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

A Mathematical Theory of Communication

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Flux balance analysis of photoautotrophic metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Enzyme function prediction with interpretable models

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Construction and analysis of a recombinant cyanobacterium expressing a chromosomally inserted gene for an ethylene-forming enzyme at the psbAI locus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

A genomic perspective on protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

The COG database: an updated version includes eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

A protocol for generating a high-quality genome-scale metabolic reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

High-throughput screen for poly-3-hydroxybutyrate in Escherichia coli and Synechocystis sp. strain PCC6803.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Metabolic engineering of Synechocystis sp. strain PCC 6803 for isobutanol production

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Getting started in biological pathway construction and analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Predicting protein function from sequence and structural data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Alternative isoleucine synthesis pathway in cyanobacterial species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

The tricarboxylic acid cycle in cyanobacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Engineering cyanobacteria for fuels and chemicals production

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS11120-013-9910-6

Ethanol synthesis by genetic engineering in cyanobacteria.

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23975204

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The past, present and future of genome-wide re-annotation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23975204

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S11120-013-9910-6

1 reference

5 February 2018

PubMed ID

23975204

1 reference

5 February 2018