RefSeq: an update on prokaryotic genome annotation and curation (Q47171562)

10 January 2018

title

RefSeq: an update on prokaryotic genome annotation and curation (English)

1 reference

10 January 2018

1 reference

Aron Marchler-Bauer

20

0 references

Daniel H Haft

1

object named as

Daniel H Haft

1 reference

10 January 2018

Kim D. Pruitt

21

object named as

Kim D Pruitt

1 reference

10 January 2018

Francoise Thibaud-Nissen

18

object named as

Françoise Thibaud-Nissen

1 reference

10 January 2018

author name string

Michael DiCuccio

2

1 reference

10 January 2018

Azat Badretdin

3

1 reference

10 January 2018

Vyacheslav Brover

4

1 reference

10 January 2018

Vyacheslav Chetvernin

5

1 reference

10 January 2018

Kathleen O'Neill

6

1 reference

10 January 2018

Wenjun Li

7

1 reference

10 January 2018

Farideh Chitsaz

8

1 reference

10 January 2018

Myra K Derbyshire

9

1 reference

10 January 2018

Noreen R Gonzales

10

1 reference

10 January 2018

Marc Gwadz

11

1 reference

10 January 2018

Fu Lu

12

1 reference

10 January 2018

Gabriele H Marchler

13

1 reference

10 January 2018

James S Song

14

1 reference

10 January 2018

Narmada Thanki

15

1 reference

10 January 2018

Roxanne A Yamashita

16

1 reference

10 January 2018

Chanjuan Zheng

17

1 reference

10 January 2018

Lewis Y Geer

19

1 reference

10 January 2018

language of work or name

English

0 references

publication date

3 November 2017

1 reference

10 January 2018

published in

Nucleic Acids Research

1 reference

10 January 2018

Sequence Polymorphism and Intrinsic Structural Disorder as Related to Pathobiological Performance of the Helicobacter pylori CagA Oncoprotein

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

NCBI prokaryotic genome annotation pipeline

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

Comparative genomics reveals new evolutionary and ecological patterns of selenium utilization in bacteria.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

The Pfam protein families database: towards a more sustainable future

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

The International Nucleotide Sequence Database Collaboration

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

Using comparative genomics to drive new discoveries in microbiology

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

Expanded microbial genome coverage and improved protein family annotation in the COG database

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

CDD: NCBI's conserved domain database

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

Applying the ResFinder and VirulenceFinder web-services for easy identification of acquired antibiotic resistance and E. coli virulence genes in bacteriophage and prophage nucleotide sequences.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suite

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

RefSeq microbial genomes database: new representation and annotation strategy

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

TIGRFAMs and Genome Properties in 2013.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

Exploring bacterial insertion sequences with ISfinder: objectives, uses, and future developments.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

Database resources of the National Center for Biotechnology Information

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

A new generation of homology search tools based on probabilistic inference

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

The National Center for Biotechnology Information's Protein Clusters Database

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

Beta-lactamase nomenclature

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

TIGRFAMs: a protein family resource for the functional identification of proteins

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

NCBI's LocusLink and RefSeq

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

The structure of β-lactamases

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

Mechanistic elucidation of the mycofactocin-biosynthetic radical S-adenosylmethionine protein, MftC.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

Dynamic evolution of selenocysteine utilization in bacteria: a balance between selenoprotein loss and evolution of selenocysteine from redox active cysteine residues

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5753331

14 August 2018

Identifiers

DOI

10.1093/NAR/GKX1068

1 reference

10 January 2018

journals/nar/HaftDBBCOLCDGGL18

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

10 January 2018

PubMed ID

29112715

1 reference

10 January 2018