The trajectory of microbial single-cell sequencing (Q46140087)

19 December 2017

title

The trajectory of microbial single-cell sequencing (English)

1 reference

19 December 2017

author

Tanja Woyke

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29088131%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Devin F R Doud

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29088131%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Frederik Schulz

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29088131%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

author name string

Tanja Woyke

1

1 reference

19 December 2017

Devin F R Doud

2

1 reference

19 December 2017

Frederik Schulz

3

1 reference

19 December 2017

publication date

1 October 2017

1 reference

19 December 2017

published in

Nature Methods

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29088131%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

volume

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29088131%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

issue

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29088131%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

page(s)

1045-1054

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29088131%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/nmeth.4469

6 June 2020

exact match

0 references

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The future is now: single-cell genomics of bacteria and archaea

21 January 2018

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Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth

21 January 2018

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A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities

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One bacterial cell, one complete genome

21 January 2018

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Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time

21 January 2018

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Nanoliter reactors improve multiple displacement amplification of genomes from single cells

21 January 2018

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Recent advances in flow cytometric cell sorting.

21 January 2018

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UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota

21 January 2018

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Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage

21 January 2018

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Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells

21 January 2018

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Virtual microfluidics for digital quantification and single-cell sequencing

21 January 2018

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Cultivating the uncultured

21 January 2018

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Capturing and cultivating single bacterial cells in gel microdroplets to obtain near-complete genomes

21 January 2018

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Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome

21 January 2018

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Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers

21 January 2018

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Single-cell genome sequencing at ultra-high-throughput with microfluidic droplet barcoding.

21 January 2018

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Assembling the marine metagenome, one cell at a time

21 January 2018

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Mechanism of chimera formation during the Multiple Displacement Amplification reaction

21 January 2018

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A Single-cell genome for Thiovulum sp.

21 January 2018

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Whole genome amplification and de novo assembly of single bacterial cells

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

21 January 2018

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IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

21 January 2018

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Genomic insights that advance the species definition for prokaryotes

21 January 2018

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Insights into the phylogeny and coding potential of microbial dark matter

21 January 2018

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Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis

21 January 2018

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Reconstructing each cell's genome within complex microbial communities-dream or reality?

21 January 2018

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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

21 January 2018

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Genome-wide detection of single-nucleotide and copy-number variations of a single human cell

21 January 2018

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Comparison of multiple displacement amplification (MDA) and multiple annealing and looping-based amplification cycles (MALBAC) in single-cell sequencing

21 January 2018

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A quantitative comparison of single-cell whole genome amplification methods

21 January 2018

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Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI).

21 January 2018

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Ecology and exploration of the rare biosphere

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

Metagenomics uncovers gaps in amplicon-based detection of microbial diversity

21 January 2018

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Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

21 January 2018

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Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis.

21 January 2018

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Review and re-analysis of domain-specific 16S primers

21 January 2018

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Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum 'Diapherotrites'

21 January 2018

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Lineages of acidophilic archaea revealed by community genomic analysis

21 January 2018

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Unusual biology across a group comprising more than 15% of domain Bacteria.

21 January 2018

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Evolution. Searching for new branches on the tree of life.

21 January 2018

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High-throughput automated microfluidic sample preparation for accurate microbial genomics.

21 January 2018

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Targeted access to the genomes of low-abundance organisms in complex microbial communities.

21 January 2018

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Wiretapping into microbial interactions by single cell genomics

21 January 2018

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Uncovering Earth’s virome

21 January 2018

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The rapidly expanding universe of giant viruses: Mimivirus, Pandoravirus, Pithovirus and Mollivirus

21 January 2018

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Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

Viral dark matter and virus-host interactions resolved from publicly available microbial genomes

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

Nanoarchaeota, Their Sulfolobales Host, and Nanoarchaeota Virus Distribution across Yellowstone National Park Hot Springs

21 January 2018

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A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Microbial diversity in the deep sea and the underexplored "rare biosphere"

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Accurate, multi-kb reads resolve complex populations and detect rare microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Ecology of the rare microbial biosphere of the Arctic Ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Hidden diversity in honey bee gut symbionts detected by single-cell genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Scaling laws predict global microbial diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Status of the Archaeal and Bacterial Census: an Update

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

A new view of the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Complex archaea that bridge the gap between prokaryotes and eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Recent advances in genomic DNA sequencing of microbial species from single cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

An environmental bacterial taxon with a large and distinct metabolic repertoire

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

Predominant archaea in marine sediments degrade detrital proteins.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

IMG/M: integrated genome and metagenome comparative data analysis system

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

Fixation-free fluorescence in situ hybridization for targeted enrichment of microbial populations.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

Rapid and sensitive identification of marine bacteria by an improved in situ DNA hybridization chain reaction (quickHCR-FISH).

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

Function-driven single-cell genomics

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

Novel approaches in function-driven single-cell genomics

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Visualizing in situ translational activity for identifying and sorting slow-growing archaeal-bacterial consortia

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

An alternative polysaccharide uptake mechanism of marine bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Effects of sample treatments on genome recovery via single-cell genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Single cell genomics: an individual look at microbes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

Genomics-informed isolation and characterization of a symbiotic Nanoarchaeota system from a terrestrial geothermal environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

In-Solution Fluorescence In Situ Hybridization and Fluorescence-Activated Cell Sorting for Single Cell and Population Genome Recovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.4469

In vitro evolution of phi29 DNA polymerase using isothermal compartmentalized self replication technique

21 January 2018

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https://api.crossref.org/works/10.1038%2FNMETH.4469

7 January 2021

inferred from DOI database lookup

Heterogeneity as an adaptive trait of the bacterial community

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12 December 2020

Ramification amplification: a novel isothermal DNA amplification method

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12 December 2020

Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics.

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12 December 2020

Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication

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12 December 2020

Inter-species interconnections in acid mine drainage microbial communities

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12 December 2020