A global regulatory role of gluconeogenic genes in Escherichia coli revealed by transcriptome network analysis. (Q45944200)

18 December 2017

title

A global regulatory role of gluconeogenic genes in Escherichia coli revealed by transcriptome network analysis. (English)

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18 December 2017

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18 December 2017

author name string

Linh M Tran

series ordinal

2

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18 December 2017

James C Liao

series ordinal

3

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18 December 2017

language of work or name

English

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publication date

31 August 2005

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18 December 2017

Journal of Biological Chemistry

number of pages

9

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based on heuristic

inferred from page(s)

published in

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volume

280

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issue

43

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18 December 2017

page(s)

36079-36087

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18 December 2017

https://api.crossref.org/works/10.1074%2FJBC.M508202200

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Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis

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Integration host factor amplifies the induction of the aceBAK operon of Escherichia coli by relieving IclR repression

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Two different modes of transcription repression of the Escherichia coli acetate operon by IclR.

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Gene expression profiling by DNA microarrays and metabolic fluxes in Escherichia coli

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Network component analysis: reconstruction of regulatory signals in biological systems

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gNCA: a framework for determining transcription factor activity based on transcriptome: identifiability and numerical implementation

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One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

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Global expression profiling of acetate-grown Escherichia coli

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Molecular cloning of the plasmid RP4 primase region in a multi-host-range tacP expression vector

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A Software Package for cDNA Microarray Data Normalization and Assessing Confidence Intervals

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Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects

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RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12

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Regulation of acetate metabolism by protein phosphorylation in enteric bacteria

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Pyruvate metabolism and the phosphorylation state of isocitrate dehydrogenase in Escherichia coli.

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Pathway analysis, engineering, and physiological considerations for redirecting central metabolism.

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The gene yjcG, cotranscribed with the gene acs, encodes an acetate permease in Escherichia coli.

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Sir2-dependent activation of acetyl-CoA synthetase by deacetylation of active lysine

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Identification of the protein acetyltransferase (Pat) enzyme that acetylates acetyl-CoA synthetase in Salmonella enterica

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Dps protects cells against multiple stresses during stationary phase

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The dps promoter is activated by OxyR during growth and by IHF and σs in stationary phase

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Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro

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Synthesis of the stationary-phase sigma factor sigma s is positively regulated by ppGpp

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Control of rRNA expression by small molecules is dynamic and nonredundant

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The cellular concentration of the sigma S subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation, and protein stability

21 January 2018

1 reference

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Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions

21 January 2018

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Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli

21 January 2018

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Stimulation of glucose catabolism in Escherichia coli by a potential futile cycle

21 January 2018

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Regulation of malate dehydrogenase (mdh) gene expression in Escherichia coli in response to oxygen, carbon, and heme availability

21 January 2018

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Identification of the CRP regulon using in vitro and in vivo transcriptional profiling

21 January 2018

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Regulation of acetyl coenzyme A synthetase in Escherichia coli.

21 January 2018

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Cyclic AMP receptor protein-dependent activation of the Escherichia coli acsP2 promoter by a synergistic class III mechanism

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21 January 2018

Identifiers

DOI

10.1074/JBC.M508202200

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18 December 2017

PubMed ID

16141204

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18 December 2017