Sorting wheat from chaff in multi-gene analyses of chlorophyll c-containing plastids. (Q44951084)

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29 December 2019

title

Sorting wheat from chaff in multi-gene analyses of chlorophyll c-containing plastids (English)

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29 December 2019

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3

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Maria Virginia Sanchez-Puerta

29 December 2019

series ordinal

1

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29 December 2019

2

Tsvetan R Bachvaroff

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29 December 2019

publication date

14 March 2007

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Molecular Phylogenetics and Evolution

29 December 2019

number of pages

13

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based on heuristic

inferred from page(s)

published in

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29 December 2019

volume

44

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29 December 2019

issue

2

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29 December 2019

page(s)

885-897

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A cyanobacterial gene in nonphotosynthetic protists--an early chloroplast acquisition in eukaryotes?

29 December 2019

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Covarion structure in plastid genome evolution: a new statistical test

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Rate variation as a function of gene origin in plastid-derived genes of peridinin-containing dinoflagellates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

A kingdom-level phylogeny of eukaryotes based on combined protein data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Complete sequence of the mitochondrial DNA of the red alga Porphyra purpurea. Cyanobacterial introns and shared ancestry of red and green algae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Chimeric conundra: are nucleomorphs and chromists monophyletic or polyphyletic?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Phylogenetic analyses of the rbcL sequences from haptophytes and heterokont algae suggest their chloroplasts are unrelated

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Phylogenomics and the reconstruction of the tree of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Tracing the Thread of Plastid Diversity through the Tapestry of Life.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Phylogenetic analysis of tufA sequences indicates a cyanobacterial origin of all plastids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

A phylogenetic assessment of the eukaryotic light-harvesting antenna proteins, with implications for plastid evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

The chloroplasts of Euglena may have evolved from symbiotic green algae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Is it better to add taxa or characters to a difficult phylogenetic problem?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Migration of the plastid genome to the nucleus in a peridinin dinoflagellate.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Comparative analysis of the complete plastid genome sequence of the red alga Gracilaria tenuistipitata var. liui provides insights into the evolution of rhodoplasts and their relationship to other plastids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

MRBAYES: Bayesian inference of phylogenetic trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Phylogenetic estimation under codon models can be biased by codon usage heterogeneity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity: dinoflagellate plastid origins as a case study

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1alpha phylogenies.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Second- and third-hand chloroplasts in dinoflagellates: phylogeny of oxygen-evolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Diversity and evolutionary history of plastids and their hosts

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Quantitative Phyletics and the Evolution of Anurans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Heterotachy and tree building: a case study with plastids and eubacteria.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

A covariotide model explains apparent phylogenetic structure of oxygenic photosynthetic lineages.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

A plastid in the making: evidence for a second primary endosymbiosis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Gene transfer to the nucleus and the evolution of chloroplasts.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Phylogenetic relationships of the ‘golden algae’ (haptophytes, heterokont chromophytes) and their plastids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

The origin of red algae and the evolution of chloroplasts.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Chimeric plastid proteome in the Florida "red tide" dinoflagellate Karenia brevis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Cyanobacterial genes transmitted to the nucleus before divergence of red algae in the Chromista

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Gene replacement of fructose-1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

A "green" phosphoribulokinase in complex algae with red plastids: evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Phylogenomics of eukaryotes: impact of missing data on large alignments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Genome-scale phylogeny and the detection of systematic biases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

MODELTEST: testing the model of DNA substitution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Evolution of glutamine synthetase in heterokonts: evidence for endosymbiotic gene transfer and the early evolution of photosynthesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Incomplete taxon sampling is not a problem for phylogenetic inference

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

The complete mitochondrial genome sequence of the haptophyte Emiliania huxleyi and its relation to heterokonts

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

The complete plastid genome sequence of the haptophyte Emiliania huxleyi: a comparison to other plastid genomes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Heterotachy processes in rhodophyte-derived secondhand plastid genes: Implications for addressing the origin and evolution of dinoflagellate plastids.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

An approximately unbiased test of phylogenetic tree selection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

CONSEL: for assessing the confidence of phylogenetic tree selection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

The single, ancient origin of chromist plastids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Tertiary endosymbiosis driven genome evolution in dinoflagellate algae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Single gene circles in dinoflagellate chloroplast genomes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003

Phylogeny of ultra-rapidly evolving dinoflagellate chloroplast genes: a possible common origin for sporozoan and dinoflagellate plastids.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2007.03.003