The origins and evolution of ubiquitination sites (Q44777782)

6 December 2017

The origins and evolution of ubiquitination sites (English)

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6 December 2017

protein ubiquitination

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Tzachi Hagai

1

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6 December 2017

Ágnes Tóth-Petróczy

series ordinal

2

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6 December 2017

Ariel Azia

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3

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6 December 2017

Yaakov Levy

series ordinal

4

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6 December 2017

15 May 2012

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6 December 2017

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6 December 2017

8

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6 December 2017

7

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6 December 2017

1865-1877

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Diversity of degradation signals in the ubiquitin-proteasome system

6 December 2017

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

The spatial and temporal organization of ubiquitin networks

21 January 2018

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https://api.crossref.org/works/10.1039%2FC2MB25052G

Cell cycle-regulated modification of the ribosome by a variant multiubiquitin chain

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Origin and function of ubiquitin-like proteins

21 January 2018

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https://api.crossref.org/works/10.1039%2FC2MB25052G

The N-end rule pathway and regulation by proteolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

The origin and early evolution of eukaryotes in the light of phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

The tails of ubiquitin precursors are ribosomal proteins whose fusion to ubiquitin facilitates ribosome biogenesis

21 January 2018

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https://api.crossref.org/works/10.1039%2FC2MB25052G

Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group.

21 January 2018

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https://api.crossref.org/works/10.1039%2FC2MB25052G

The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Crystal structure of SUMO-3-modified thymine-DNA glycosylase

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Ubiquitin not only serves as a tag but also assists degradation by inducing protein unfolding

21 January 2018

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https://api.crossref.org/works/10.1039%2FC2MB25052G

Intrinsic disorder in ubiquitination substrates.

21 January 2018

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https://api.crossref.org/works/10.1039%2FC2MB25052G

Crystal Structure of SUMO-Modified Proliferating Cell Nuclear Antigen

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Mechanism of processing of the NF-kappa B2 p100 precursor: identification of the specific polyubiquitin chain-anchoring lysine residue and analysis of the role of NEDD8-modification on the SCF(beta-TrCP) ubiquitin ligase

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Context of multiubiquitin chain attachment influences the rate of Sic1 degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

The N-terminal regulatory domain of cyclin A contains redundant ubiquitination targeting sequences and acceptor sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Mutagenic analysis of the destruction signal of mitotic cyclins and structural characterization of ubiquitinated intermediates

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation

21 January 2018

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https://api.crossref.org/works/10.1039%2FC2MB25052G

Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution

21 January 2018

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https://api.crossref.org/works/10.1039%2FC2MB25052G

Weak functional constraints on phosphoproteomes

21 January 2018

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https://api.crossref.org/works/10.1039%2FC2MB25052G

Evolution of characterized phosphorylation sites in budding yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Rampant purifying selection conserves positions with posttranslational modifications in human proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Genome-wide evolutionary conservation of N-glycosylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Proteome-Wide Mapping of the Drosophila Acetylome Demonstrates a High Degree of Conservation of Lysine Acetylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Phosphorylation network rewiring by gene duplication

21 January 2018

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https://api.crossref.org/works/10.1039%2FC2MB25052G

UbiProt: a database of ubiquitylated proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Infrastructure for the life sciences: design and implementation of the UniProt website

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

InParanoid 6: eukaryotic ortholog clusters with inparalogs

21 January 2018

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https://api.crossref.org/works/10.1039%2FC2MB25052G

Natural history and evolutionary principles of gene duplication in fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

A proteomics approach to understanding protein ubiquitination

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

ProtTest: selection of best-fit models of protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Proteome-wide evidence for enhanced positive Darwinian selection within intrinsically disordered regions in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Slow protein evolutionary rates are dictated by surface-core association

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Comparing models of evolution for ordered and disordered proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

PONDR-FIT: a meta-predictor of intrinsically disordered amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Molecular docking using surface complementarity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

The PredictProtein server

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Regulatory evolution in proteins by turnover and lineage-specific changes of cyclin-dependent kinase consensus sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Molecular characterization of the evolution of phagosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Measuring the evolutionary rewiring of biological networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Identification, analysis, and prediction of protein ubiquitination sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Incorporating distant sequence features and radial basis function networks to identify ubiquitin conjugation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Structure of a beta-TrCP1-Skp1-beta-catenin complex: destruction motif binding and lysine specificity of the SCF(beta-TrCP1) ubiquitin ligase

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Sequential modification of NEMO/IKKgamma by SUMO-1 and ubiquitin mediates NF-kappaB activation by genotoxic stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Chemically ubiquitylated PCNA as a probe for eukaryotic translesion DNA synthesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Principles of ubiquitin and SUMO modifications in DNA repair.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Subtle alterations in PCNA-partner interactions severely impair DNA replication and repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Defects in DNA ligase I trigger PCNA ubiquitylation at Lys 107.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

The hypoxia-inducible transcription factor pathway regulates oxygen sensing in the simplest animal, Trichoplax adhaerens

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Evolutionary origins of oxygen sensing in animals

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Role of the von Hippel-Lindau tumour suppressor protein in the regulation of HIF-1alpha and its oxygen-regulated transactivation domains at high cell density.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

A mechanism for the evolution of phosphorylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

Evolution of phosphorylation-dependent regulation of activation-induced cytidine deaminase

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25052G

21 January 2018

Identifiers

DOI

10.1039/C2MB25052G

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6 December 2017

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