MP-T: improving membrane protein alignment for structure prediction (Q44731767)

5 December 2017

MP-T: improving membrane protein alignment for structure prediction (English)

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protein structure prediction

5 December 2017

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2

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5 December 2017

Jamie R Hill

1

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PubMed ID

23110969

5 December 2017

language of work or name

English

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publication date

30 October 2012

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5 December 2017

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5 December 2017

29

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5 December 2017

1

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5 December 2017

54-61

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

5 December 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

21 January 2018

The Protein Data Bank

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Search and clustering orders of magnitude faster than BLAST

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Amino acid substitution matrices from protein blocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Environment specific substitution tables improve membrane protein alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Protein secondary structure prediction based on position-specific scoring matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Recent developments in the MAFFT multiple sequence alignment program

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

iMembrane: homology-based membrane-insertion of proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

MEDELLER: homology-based coordinate generation for membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

A study of the evolution of inverted-topology repeats from LeuT-fold transporters using AlignMe.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

JOY: protein sequence-structure representation and analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Critical assessment of methods of protein structure prediction (CASP)--round IX

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

T-Coffee: A novel method for fast and accurate multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

How many drug targets are there?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

PROMALS: towards accurate multiple sequence alignments of distantly related proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Comprehensive comparison of graph based multiple protein sequence alignment strategies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Large-scale comparison of protein sequence alignment algorithms with structure alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Coarse-grained MD simulations of membrane protein-bilayer self-assembly.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Protein homology detection by HMM-HMM comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

UniRef: comprehensive and non-redundant UniProt reference clusters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Multiple alignment by aligning alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

Scoring function for automated assessment of protein structure template quality

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

TM-align: a protein structure alignment algorithm based on the TM-score

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS640

10.1093/BIOINFORMATICS/BTS640

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/HillD13

5 December 2017

1 reference

DBLP Dataset 2021-01-02

release_sv3kgc6yy5hy7ectfc33okg324

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/sv3kgc6yy5hy7ectfc33okg324

mapped directly with Wikidata item

24 November 2022

based on heuristic

PubMed ID

23110969

1 reference

PubMed ID

23110969