Interaction between selection and biased gene conversion in mammalian protein-coding sequence evolution revealed by a phylogenetic covariance analysis (Q44396836)

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scientific article published on 29 September 2012

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English	Interaction between selection and biased gene conversion in mammalian protein-coding sequence evolution revealed by a phylogenetic covariance analysis	scientific article published on 29 September 2012

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scholarly article

1 reference

Europe PubMed Central

2 December 2017

Interaction between selection and biased gene conversion in mammalian protein-coding sequence evolution revealed by a phylogenetic covariance analysis (English)

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Europe PubMed Central

2 December 2017

protein evolution

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based on heuristic

inferred from title

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based on heuristic

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author name string

Nicolas Lartillot

1

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Europe PubMed Central

2 December 2017

publication date

29 September 2012

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Europe PubMed Central

2 December 2017

Molecular Biology and Evolution

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Europe PubMed Central

2 December 2017

30

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Europe PubMed Central

2 December 2017

2

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Europe PubMed Central

2 December 2017

356-368

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Europe PubMed Central

2 December 2017

Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density, and telomere-specific effects.

1 reference

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21 January 2018

Distinct changes of genomic biases in nucleotide substitution at the time of Mammalian radiation.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Hotspots of biased nucleotide substitutions in human genes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

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Reconstructing the genomic architecture of ancestral mammals: lessons from human, mouse, and rat genomes

1 reference

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Parallel adaptations to high temperatures in the Archaean eon.

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Assessing the evolutionary impact of amino acid mutations in the human genome

1 reference

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21 January 2018

Substitution patterns are GC-biased in divergent sequences across the metazoans

1 reference

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21 January 2018

The other side of the nearly neutral theory, evidence of slightly advantageous back-mutations

1 reference

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21 January 2018

A methodological framework for the reconstruction of contiguous regions of ancestral genomes and its application to mammalian genomes

1 reference

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Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes

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Substitution patterns are under different influences in primates and rodents

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A database of vertebrate longevity records and their relation to other life-history traits

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Biased clustered substitutions in the human genome: the footprints of male-driven biased gene conversion

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21 January 2018

The impact of recombination on nucleotide substitutions in the human genome

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Biased gene conversion and the evolution of mammalian genomic landscapes

1 reference

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Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change

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Non-adaptive origins of interactome complexity

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Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution

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GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates.

1 reference

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21 January 2018

Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis.

1 reference

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Phylogenetic approaches in comparative physiology

1 reference

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Eukaryotic genome size databases

1 reference

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21 January 2018

Evidence for pervasive adaptive protein evolution in wild mice

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Ongoing GC-biased evolution is widespread in the human genome and enriched near recombination hot spots

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

What can we learn about the distribution of fitness effects of new mutations from DNA sequence data?

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Model of effectively neutral mutations in which selective constraint is incorporated

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Patterns of positive selection in six Mammalian genomes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

The neutral theory is dead. Long live the neutral theory

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Watching the clock: studying variation in rates of molecular evolution between species

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Computing Bayes factors using thermodynamic integration.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

A phylogenetic model for investigating correlated evolution of substitution rates and continuous phenotypic characters.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

The molecular clock runs more slowly in man than in apes and monkeys

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Evolution of the mutation rate

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Rate, molecular spectrum, and consequences of human mutation

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

The origins of genome complexity

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Mutation pressure and the evolution of organelle genomic architecture

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Parallel adaptive radiations in two major clades of placental mammals

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Body size, metabolic rate, generation time, and the molecular clock

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Phylogenies and the Comparative Method: A General Approach to Incorporating Phylogenetic Information into the Analysis of Interspecific Data

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Recombination drives the evolution of GC-content in the human genome.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Resolution of the early placental mammal radiation using Bayesian phylogenetics

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

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Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps

1 reference

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21 January 2018

Using genomic data to unravel the root of the placental mammal phylogeny

1 reference

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21 January 2018

A fine-scale map of recombination rates and hotspots across the human genome

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Strong variations of mitochondrial mutation rate across mammals--the longevity hypothesis

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Evolution of a finite population under gene conversion

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Estimating the distribution of selection coefficients from phylogenetic data with applications to mitochondrial and viral DNA.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements

1 reference

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21 January 2018

Mutational pressure as the main cause of molecular evolution and polymorphism

1 reference

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21 January 2018

Analysis of comparative data using generalized estimating equations

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Recombination is proportional to the number of chromosome arms in mammals

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Accumulation of slightly deleterious mutations in mitochondrial protein-coding genes of large versus small mammals

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Inferring speciation times under an episodic molecular clock

1 reference

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21 January 2018

Detecting positive selection within genomes: the problem of biased gene conversion

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

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Placental mammal diversification and the Cretaceous-Tertiary boundary

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

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Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

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Strong regional biases in nucleotide substitution in the chicken genome.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Male-driven biased gene conversion governs the evolution of base composition in human alu repeats.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Correlates of substitution rate variation in mammalian protein-coding sequences

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Divergence and polymorphism under the nearly neutral theory of molecular evolution.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

21 January 2018

Drift and genome complexity revisited.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

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Improving marginal likelihood estimation for Bayesian phylogenetic model selection

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

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Inference of selection from multiple species alignments

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

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Recovering genome rearrangements in the mammalian phylogeny

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

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Phylogenies and the Comparative Method

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS231

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Detecting Site-Specific Physicochemical Selective Pressures: Applications to the Class I HLA of the Human Major Histocompatibility Complex and the SRK of the Plant Sporophytic Self-Incompatibility System

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21 January 2018

Quantifying the Slightly Deleterious Mutation Model of Molecular Evolution

1 reference

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21 January 2018

Identifiers

10.1093/MOLBEV/MSS231

1 reference

Europe PubMed Central

2 December 2017

1 reference

Europe PubMed Central

2 December 2017

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