Addition of side chains to a known backbone with defined side-chain centroids (Q44368449)

2 December 2017

Addition of side chains to a known backbone with defined side-chain centroids (English)

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2 December 2017

3

Harold A Scheraga

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2 December 2017

2

Adam Liwo

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2 December 2017

Rajmund Kaźmierkiewicz

series ordinal

1

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2 December 2017

1 January 2003

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2 December 2017

Biophysical Chemistry

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2 December 2017

100

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2 December 2017

1-3

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2 December 2017

261-280

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Prediction of protein conformation on the basis of a search for compact structures: test on avian pancreatic polypeptide

2 December 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Energy-based de novo protein folding by conformational space annealing and an off-lattice united-residue force field: application to the 10-55 fragment of staphylococcal protein A and to apo calbindin D9K.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Protein structure prediction by global optimization of a potential energy function.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Recent improvements in prediction of protein structure by global optimization of a potential energy function.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Development of Physics-Based Energy Functions that Predict Medium-Resolution Structures for Proteins of the α, β, and α/β Structural Classes

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Calculation of protein backbone geometry from alpha-carbon coordinates based on peptide-group dipole alignment

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Energy-based reconstruction of a protein backbone from its alpha-carbon trace by a Monte-Carlo method

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Prediction of protein side-chain conformation by packing optimization.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

A new approach to the rapid determination of protein side chain conformations

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

The dead-end elimination theorem and its use in protein side-chain positioning

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Improvement of side-chain modeling in proteins with the self-consistent mean field theory method based on an analysis of the factors influencing prediction.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Generalized dead-end elimination algorithms make large-scale protein side-chain structure prediction tractable: implications for protein design and structural genomics.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Rebuilding flavodoxin from C alpha coordinates: a test study

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

The building of protein structures from alpha-carbon coordinates

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https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Construction of side-chains in homology modelling. Application to the C-terminal lobe of rhizopuspepsin

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Accurate modeling of protein conformation by automatic segment matching

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Modeling side-chain conformation for homologous proteins using an energy-based rotamer search

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

A method to configure protein side-chains from the main-chain trace in homology modelling

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Comparative modeling of CASP3 targets using PSI-BLAST and SCWRL

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Knowledge-based prediction of protein structures and the design of novel molecules

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Analysis of side-chain orientations in homologous proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

The penultimate rotamer library

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Equation of State Calculations by Fast Computing Machines

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Automated modeling of coiled coils: application to the GCN4 dimerization region

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

The fuzzy-end elimination theorem: correctly implementing the side chain placement algorithm based on the dead-end elimination theorem

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Computational studies of ligand diffusion in globins: I. Leghemoglobin

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Generalized comparative modeling (GENECOMP): a combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

IUPAC-IUB Commission on Biochemical Nomenclature. Abbreviations and symbols for the description of the conformation of polypeptide chains. Tentative rules (1969)

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Calculation of protein conformation by the build-up procedure. Application to bovine pancreatic trypsin inhibitor using limited simulated nuclear magnetic resonance data

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

The third IgG-binding domain from streptococcal protein G. An analysis by X-ray crystallography of the structure alone and in a complex with Fab

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Structure of bovine pancreatic trypsin inhibitor at 125 K definition of carboxyl-terminal residues Gly57 and Ala58.

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

The solution structure of the RING finger domain from the acute promyelocytic leukaemia proto-oncoprotein PML

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Accommodation of insertions in helices: the mutation in hemoglobin Catonsville (Pro 37 alpha-Glu-Thr 38 alpha) generates a 3(10)-->alpha bulge

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

The refined crystal structure of Drosophila lebanonensis alcohol dehydrogenase at 1.9 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

Accuracy of side-chain prediction upon near-native protein backbones generated by Ab initio folding methods

1 reference

https://api.crossref.org/works/10.1016%2FS0301-4622%2802%2900285-5

7 January 2021

10.1016/S0301-4622(02)00285-5

Identifiers

DOI

1 reference

2 December 2017

1 reference

PubMed ID

12646370