Conservation of helical structure contributes to functional metal ion interactions in the catalytic domain of ribonuclease P RNA. (Q44225427)

1 December 2017

Conservation of helical structure contributes to functional metal ion interactions in the catalytic domain of ribonuclease P RNA. (English)

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1 December 2017

Nicholas M Kaye

1

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1 December 2017

Nathan H Zahler

series ordinal

2

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1 December 2017

Eric L Christian

series ordinal

3

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1 December 2017

Michael E Harris

series ordinal

4

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1 December 2017

language of work or name

English

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publication date

1 November 2002

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Journal of Molecular Biology

1 December 2017

14

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based on heuristic

inferred from page(s)

published in

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1 December 2017

324

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1 December 2017

3

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1 December 2017

429-442

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Ribonuclease P: a ribonucleoprotein enzyme

1 December 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Ribonuclease P: unity and diversity in a tRNA processing ribozyme

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

RNase P RNAs from some Archaea are catalytically active

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Ribonuclease P structure and function in Archaea

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Eukaryotic ribonuclease P: increased complexity to cope with the nuclear pre-tRNA pathway

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Comparative analysis of ribonuclease P RNA structure in Archaea

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

New insight into RNase P RNA structure from comparative analysis of the archaeal RNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

The Ribonuclease P Database

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Secondary structure of RNase MRP RNA as predicted by phylogenetic comparison.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

The yeast, Saccharomyces cerevisiae, RNase P/MRP ribonucleoprotein endoribonuclease family

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Structural and functional similarities between MRP and RNase P.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Use of RNA secondary structure for studying the evolution of RNase P and RNase MRP

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Rp-phosphorothioate modifications in RNase P RNA that interfere with tRNA binding.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Identification of adenosine functional groups involved in substrate binding by the ribonuclease P ribozyme

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Helix P4 is a divalent metal ion binding site in the conserved core of the ribonuclease P ribozyme

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

NAIM and site-specific functional group modification analysis of RNase P RNA: magnesium dependent structure within the conserved P1-P4 multihelix junction contributes to catalysis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Identification of individual nucleotides in the bacterial ribonuclease P ribozyme adjacent to the pre-tRNA cleavage site by short-range photo-cross-linking

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

The track of the pre-tRNA 5' leader in the ribonuclease P ribozyme-substrate complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Different cleavage sites are aligned differently in the active site of M1 RNA, the catalytic subunit of Escherichia coli RNase P.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Identification by modification-interference of purine N-7 and ribose 2'-OH groups critical for catalysis by bacterial ribonuclease P.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

In vitro selection for altered divalent metal specificity in the RNase P RNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Evidence for a polynuclear metal ion binding site in the catalytic domain of ribonuclease P RNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Use of terbium as a probe of tRNA tertiary structure and folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Metal ion binding sites in a group II intron core

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Diverse roles of metal ions in acyl-transferase ribozymes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Probing non-selective cation binding in the hairpin ribozyme with Tb(III).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

On the role of magnesium ions in RNA stability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Affinities and selectivities of divalent cation binding sites within an RNA tertiary structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Kinetic analysis of the M1 RNA folding pathway

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Metal ion requirements and other aspects of the reaction catalyzed by M1 RNA, the RNA subunit of ribonuclease P from Escherichia coli.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Higher order folding and domain analysis of the ribozyme from Bacillus subtilis ribonuclease P.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Magnesium ions are required by Bacillus subtilis ribonuclease P RNA for both binding and cleaving precursor tRNAAsp

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Metal ion cooperativity in ribozyme cleavage of RNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Monitoring the structure of Escherichia coli RNase P RNA in the presence of various divalent metal ions

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Pathway of activation by magnesium ions of substrates for the catalytic subunit of RNase P from Escherichia coli.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Multiple magnesium ions in the ribonuclease P reaction mechanism

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Role of metal ions in the hydrolysis reaction catalyzed by RNase P RNA from Bacillus subtilis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

The secondary structure of ribonuclease P RNA, the catalytic element of a ribonucleoprotein enzyme

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Comparative analysis of ribonuclease P RNA using gene sequences from natural microbial populations reveals tertiary structural elements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

26 Design of simplified ribonuclease P RNA by phylogenetic comparison

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Crystal structure of a group I ribozyme domain: principles of RNA packing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

A preorganized active site in the crystal structure of the Tetrahymena ribozyme

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

The chemical basis of adenosine conservation throughout the Tetrahymena ribozyme

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Complementary sets of noncanonical base pairs mediate RNA helix packing in the group I intron active site

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

A minor groove RNA triple helix within the catalytic core of a group I intron

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Metal-binding sites in the major groove of a large ribozyme domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Lead-catalyzed cleavage of ribonuclease P RNA as a probe for integrity of tertiary structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Lead-ion-induced cleavage of RNase P RNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Mutational analysis of the joining regions flanking helix P18 in E. coli RNase P RNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Guanosine 2-NH2 groups of Escherichia coli RNase P RNA involved in intramolecular tertiary contacts and direct interactions with tRNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Visualizing the higher order folding of a catalytic RNA molecule

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Folding of group I introns from bacteriophage T4 involves internalization of the catalytic core

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Visualizing the solvent-inaccessible core of a group II intron ribozyme

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Crystal structure of a lead-dependent ribozyme revealing metal binding sites relevant to catalysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

A 1.3-A resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Two crystal forms of helix II of Xenopus laevis 5S rRNA with a cytosine bulge

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Ribozyme catalysis from the major groove of group II intron domain 5.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Metal ion coordination by the AGC triad in domain 5 contributes to group II intron catalysis

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Metal coordination sites that contribute to structure and catalysis in the group I intron from Tetrahymena.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Identification of an active site ligand for a group I ribozyme catalytic metal ion.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

A novel base-pairing interaction between U2 and U6 snRNAs suggests a mechanism for the catalytic activation of the spliceosome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Differential chemical probing of a group II self-splicing intron identifies bases involved in tertiary interactions and supports an alternative secondary structure model of domain V

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Metal-ion coordination by U6 small nuclear RNA contributes to catalysis in the spliceosome.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Directed mutagenesis using PCR.

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

A kinetic mechanism for cleavage of precursor tRNA(Asp) catalyzed by the RNA component of Bacillus subtilis ribonuclease P

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Gel retardation analysis of E. coli M1 RNA-tRNA complexes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

Comparative photocross-linking analysis of the tertiary structures of Escherichia coli and Bacillus subtilis RNase P RNAs.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901094-X

10.1016/S0022-2836(02)01094-X

7 January 2021

Identifiers

DOI

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1 December 2017

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