Class of multiple sequence alignment algorithm affects genomic analysis (Q44221689)

1 December 2017

Class of multiple sequence alignment algorithm affects genomic analysis (English)

1 reference

1 December 2017

1 reference

Benjamin P. Blackburne

series ordinal

1

1 reference

1 December 2017

Simon Whelan

2

1 reference

1 December 2017

9 November 2012

1 reference

Molecular Biology and Evolution

1 December 2017

1 reference

1 December 2017

30

1 reference

1 December 2017

3

1 reference

1 December 2017

642-653

1 reference

Human-specific evolution and adaptation led to major qualitative differences in the variable receptors of human and chimpanzee natural killer cells

1 December 2017

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Measuring the distance between multiple sequence alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Integration of evolutionary and desolvation energy analysis identifies functional sites in a plant immunity protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Phylogenetic assessment of alignments reveals neglected tree signal in gaps

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

ProbCons: Probabilistic consistency-based multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Relaxed phylogenetics and dating with confidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

INDELible: a flexible simulator of biological sequence evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Rfam: Wikipedia, clans and the "decimal" release

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Statistical alignment: computational properties, homology testing and goodness-of-fit.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Recent developments in the MAFFT multiple sequence alignment program

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Patterns of positive selection in six Mammalian genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

An exact algorithm for the geodesic distance between phylogenetic trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Clustal W and Clustal X version 2.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

High sensitivity to aligner and high rate of false positives in the estimates of positive selection in the 12 Drosophila genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Identification of innate immunity elicitors using molecular signatures of natural selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Effects of nucleotide sequence alignment on phylogeny estimation: a case study of 18S rDNAs of apicomplexa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

T-Coffee: A novel method for fast and accurate multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Joint Bayesian Estimation of Alignment and Phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Positive selection differs between protein secondary structure elements in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Probalign: multiple sequence alignment using partition function posterior probabilities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

The Adaptive Evolution Database (TAED): a phylogeny based tool for comparative genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Inferring speciation and extinction processes from extant species data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Statistical significance for genomewide studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Inching toward reality: an improved likelihood model of sequence evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Alignment uncertainty and genomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

Bayes empirical bayes inference of amino acid sites under positive selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS256

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSS256

1 reference

1 December 2017

1 reference

PubMed ID

23144040