Simple physical models connect theory and experiment in protein folding kinetics (Q44129178)

30 November 2017

title

Simple physical models connect theory and experiment in protein folding kinetics (English)

1 reference

30 November 2017

0 references

3

Tanja Kortemme

0 references

David Baker

object named as

David Baker

series ordinal

4

0 references

Eric J. Alm

series ordinal

1

object named as

Eric Alm

1 reference

30 November 2017

Alexandre V Morozov

2

1 reference

30 November 2017

language of work or name

English

0 references

publication date

1 September 2002

1 reference

Journal of Molecular Biology

30 November 2017

published in

1 reference

30 November 2017

volume

322

1 reference

30 November 2017

issue

2

1 reference

30 November 2017

page(s)

463-476

1 reference

Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures

30 November 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

A theoretical search for folding/unfolding nuclei in three-dimensional protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

A simple model for calculating the kinetics of protein folding from three-dimensional structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Microscopic theory of protein folding rates. I. Fine structure of the free energy profile and folding routes from a variational approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Contact order, transition state placement and the refolding rates of single domain proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Experiment and theory highlight role of native state topology in SH3 folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

A breakdown of symmetry in the folding transition state of protein L

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Critical role of beta-hairpin formation in protein G folding.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Computer-based redesign of a protein folding pathway

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Conversion of monomeric protein L to an obligate dimer by computational protein design

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

The SH3-fold family: experimental evidence and prediction of variations in the folding pathways

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Mapping the transition state and pathway of protein folding by protein engineering

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

A short linear peptide that folds into a native stable beta-hairpin in aqueous solution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Accurate computer-based design of a new backbone conformation in the second turn of protein L

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Obligatory steps in protein folding and the conformational diversity of the transition state

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

The order of secondary structure elements does not determine the structure of a protein but does affect its folding kinetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Structure of the transition state for folding of the 129 aa protein CheY resembles that of a smaller protein, CI-2

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

The folding of an enzyme. III. Structure of the transition state for unfolding of barnase analysed by a protein engineering procedure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Mapping the folding pathway of an immunoglobulin domain: structural detail from Phi value analysis and movement of the transition state

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

The folding nucleus of a fibronectin type III domain is composed of core residues of the immunoglobulin-like fold

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

The folding of an immunoglobulin-like Greek key protein is defined by a common-core nucleus and regions constrained by topology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

From snapshot to movie: phi analysis of protein folding transition states taken one step further

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Structure of the transition state in the folding process of human procarboxypeptidase A2 activation domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Salt-induced detour through compact regions of the protein folding landscape

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Exploring the energy surface of protein folding by structure-reactivity relationships and engineered proteins: observation of Hammond behavior for the gross structure of the transition state and anti-Hammond behavior for structural elements for unfo

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Mapping the interactions present in the transition state for unfolding/folding of FKBP12.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

The folding pathway of the cell-cycle regulatory protein p13suc1: clues for the mechanism of domain swapping

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

The energy landscape of a fast-folding protein mapped by Ala-->Gly substitutions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

The formation of a native-like structure containing eight conserved hydrophobic residues is rate limiting in two-state protein folding of ACBP

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Differential stabilization of two hydrophobic cores in the transition state of the villin 14T folding reaction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Reaction-rate theory: fifty years after Kramers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Master Equation Approach to Protein Folding and Kinetic Traps

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Searching for "downhill scenarios" in protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

NMR characterization of residual structure in the denatured state of protein L

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

Mechanisms of protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

How do small single-domain proteins fold?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900706-4

10.1016/S0022-2836(02)00706-4

7 January 2021

Identifiers

DOI

1 reference

30 November 2017

1 reference