Loss of DNA polymerase beta stacking interactions with templating purines, but not pyrimidines, alters catalytic efficiency and fidelity. (Q43833668)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11756435%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

title

Loss of DNA polymerase beta stacking interactions with templating purines, but not pyrimidines, alters catalytic efficiency and fidelity (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11756435%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11756435%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

author name string

William A Beard

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11756435%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

David D Shock

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11756435%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

Xiao-Ping Yang

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11756435%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

Saundra F DeLauder

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11756435%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

language of work or name

English

0 references

publication date

26 December 2001

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11756435%20AND%20SRC:MED&resulttype=core&format=json

Journal of Biological Chemistry

5 December 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11756435%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

volume

277

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11756435%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

issue

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11756435%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

page(s)

8235-8242

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11756435%20AND%20SRC:MED&resulttype=core&format=json

Structural design of a eukaryotic DNA repair polymerase: DNA polymerase beta.

5 December 2019

cites work

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

DNA polymerase beta belongs to an ancient nucleotidyltransferase superfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: implications for drug resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Structure of the replicating complex of a pol alpha family DNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Enzyme-DNA interactions required for efficient nucleotide incorporation and discrimination in human DNA polymerase beta.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

DNA polymerase beta: structure-fidelity relationship from Pre-steady-state kinetic analyses of all possible correct and incorrect base pairs for wild type and R283A mutant

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase beta. Implication for the identity of the rate-limiting conformational change

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

DNA polymerase beta: analysis of the contributions of tyrosine-271 and asparagine-279 to substrate specificity and fidelity of DNA replication by pre-steady-state kinetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

The lyase activity of the DNA repair protein beta-polymerase protects from DNA-damage-induced cytotoxicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Molecular cloning and high-level expression of human polymerase beta cDNA and comparison of the purified recombinant human and rat enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Probing the energetics of oligo(dT).poly(dA) by laser cross-linking

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Structure-function analysis of the mammalian DNA polymerase beta active site: role of aspartic acid 256, arginine 254, and arginine 258 in nucleotidyl transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

dNTP binding to HIV-1 reverse transcriptase and mammalian DNA polymerase beta as revealed by affinity labeling with a photoreactive dNTP analog.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Mammalian abasic site base excision repair. Identification of the reaction sequence and rate-determining steps.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Varied Molecular Interactions at the Active Sites of Several DNA Polymerases: Nonpolar Nucleoside Isosteres as Probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

An open and closed case for all polymerases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Crystal structures of a ddATP-, ddTTP-, ddCTP, and ddGTP- trapped ternary complex of Klentaq1: insights into nucleotide incorporation and selectivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Structural and thermodynamic studies on the adenine.guanine mismatch in B-DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Uniquely altered DNA replication fidelity conferred by an amino acid change in the nucleotide binding pocket of human immunodeficiency virus type 1 reverse transcriptase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Characterization of an African swine fever virus 20-kDa DNA polymerase involved in DNA repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

The effect of DNA structure on the catalytic efficiency and fidelity of human DNA polymerase beta on templates with platinum-DNA adducts

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Raster3D: photorealistic molecular graphics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Structural insights into DNA polymerase beta fidelity: hold tight if you want it right

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Minor groove interactions at the DNA polymerase beta active site modulate single-base deletion error rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Base substitution specificity of DNA polymerase beta depends on interactions in the DNA minor groove

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

Kinetic analysis of template.primer interactions with recombinant forms of HIV-1 reverse transcriptase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

DNA polymerase beta conducts the gap-filling step in uracil-initiated base excision repair in a bovine testis nuclear extract.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

DNA polymerase beta: contributions of template-positioning and dNTP triphosphate-binding residues to catalysis and fidelity

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M107286200

21 January 2018

Identifiers

DOI

10.1074/JBC.M107286200

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11756435%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

1 reference