Recognition and positioning of mRNA in the ribosome by tRNAs with expanded anticodons. (Q43227807)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16730356%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

title

Recognition and positioning of mRNA in the ribosome by tRNAs with expanded anticodons (English)

1 reference

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28 January 2020

1

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28 January 2020

author name string

Kurt Fredrick

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16730356%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

language of work or name

English

0 references

publication date

17 May 2006

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16730356%20AND%20SRC:MED&resulttype=core&format=json

Journal of Molecular Biology

28 January 2020

published in

1 reference

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28 January 2020

volume

360

1 reference

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28 January 2020

issue

3

1 reference

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28 January 2020

page(s)

599-609

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16730356%20AND%20SRC:MED&resulttype=core&format=json

Destabilization of the P site codon-anticodon helix results from movement of tRNA into the P/E hybrid state within the ribosome.

28 January 2020

cites work

1 reference

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Function of the ribosomal E-site: a mutagenesis study

25 May 2018

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An expanded genetic code with a functional quadruplet codon

25 May 2018

1 reference

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Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit

25 May 2018

1 reference

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In vivo evidence for the prokaryotic model of extended codon-anticodon interaction in translation initiation

25 May 2018

1 reference

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Insertions in the anticodon loop of tRNA1Gln(sufG) and tRNA(Lys) promote quadruplet decoding of CAAA.

25 May 2018

1 reference

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Exploring the limits of codon and anticodon size

25 May 2018

1 reference

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Five-base codons for incorporation of nonnatural amino acids into proteins

25 May 2018

1 reference

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The path of messenger RNA through the ribosome

25 May 2018

1 reference

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Crystal structure of the ribosome at 5.5 A resolution

25 May 2018

1 reference

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Expanding the genetic code: selection of efficient suppressors of four-base codons and identification of "shifty" four-base codons with a library approach in Escherichia coli

25 May 2018

1 reference

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Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics

25 May 2018

1 reference

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Tagging ribosomal protein S7 allows rapid identification of mutants defective in assembly and function of 30 S subunits

25 May 2018

1 reference

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A new model for phenotypic suppression of frameshift mutations by mutant tRNAs

25 May 2018

1 reference

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EF-G-catalyzed translocation of anticodon stem-loop analogs of transfer RNA in the ribosome

25 May 2018

1 reference

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Compilation of tRNA sequences and sequences of tRNA genes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Mapping the inside of the ribosome with an RNA helical ruler

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

A double-filter method for nitrocellulose-filter binding: application to protein-nucleic acid interactions

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Nucleotide sequence of the SUF2 frameshift suppressor gene of Saccharomyces cerevisiae

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Codon recognition during frameshift suppression in Saccharomyces cerevisiae

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Anticodon shift in tRNA: a novel mechanism in missense and nonsense suppression

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

The yeast frameshift suppressor gene SUF16-1 encodes an altered glycine tRNA containing the four-base anticodon 3'-CCCG-5'

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Genetic characterization of the sufj frameshift suppressor in Salmonella typhimurium.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

25 May 2018

Frameshift suppression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Suppressor sufJ: a novel type of tRNA mutant that induces translational frameshifting

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Frameshift Suppression: a Nucleotide Addition in the Anticodon of a Glycine Transfer RNA

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Frameshift suppressors. II. Genetic mapping and dominance studies.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Reading frame selection and transfer RNA anticodon loop stacking.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Selection of the initiator tRNA by Escherichia coli initiation factors.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Insertion (sufB) in the anticodon loop or base substitution (sufC) in the anticodon stem of tRNAPro2fromSalmonella typhimuriuminduces suppression of frameshift mutations

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Seven, eight and nine-membered anticodon loop mutants of tRNA(2Arg) which cause +1 frameshifting. Tolerance of DHU arm and other secondary mutations.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

A Salmonella frameshift suppressor that acts at runs of A residues in the messenger RNA

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Missense and nonsense suppressors can correct frameshift mutations.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Aminoacylation of RNA minihelices with alanine.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Translocation of a tRNA with an extended anticodon through the ribosome

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Catalysis of ribosomal translocation by sparsomycin

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Incorporation of nonnatural amino acids into proteins by using various four-base codons in an Escherichia coli in vitro translation system

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Conformational changes in the ribosome induced by translational miscoding agents.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Quadruplet codons: implications for code expansion and the specification of translation step size

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Four-base codons ACCA, ACCU and ACCC are recognized by frameshift suppressor sufJ

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Restoration of In-phase Translation by an Unlinked Suppressor of a Frameshift Mutation in Salmonella typhimurium

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Crystal Structures of the Ribosome in Complex with Release Factors RF1 and RF2 Bound to a Cognate Stop Codon

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2602952

Idiosyncratic tuning of tRNAs to achieve uniform ribosome binding

29 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16730356

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JMB.2006.05.006

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16730356%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16730356%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

1 reference