H-bonding in protein hydration revisited (Q43094770)

13 November 2017

H-bonding in protein hydration revisited (English)

1 reference

13 November 2017

2

1 reference

13 November 2017

Michael Petukhov

1

1 reference

PMCID

2279814

13 November 2017

Leonid Firsov

series ordinal

3

1 reference

PMCID

2279814

13 November 2017

Luis Serrano

series ordinal

4

1 reference

13 November 2017

6 July 2004

1 reference

13 November 2017

1 reference

13 November 2017

13

1 reference

13 November 2017

8

1 reference

13 November 2017

2120-2129

1 reference

Theoretical studies on solvation contribution to the thermodynamic stability of mutants of lysozyme T4.

13 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

The hydration of amides in helices; a comprehensive picture from molecular dynamics, IR, and NMR.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Interatomic potentials and solvation parameters from protein engineering data for buried residues

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Biological water at the protein surface: dynamical solvation probed directly with femtosecond resolution

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Local water bridges and protein conformational stability

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Effective energy function for proteins in solution

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Theory of hydrophobic interactions

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Water molecules in DNA recognition II: a molecular dynamics view of the structure and hydration of the trp operator

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

A statistical mechanical description of biomolecular hydration

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Comparison of atomic solvation parametric sets: applicability and limitations in protein folding and binding

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Role of hydration and water structure in biological and colloidal interactions

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Calculations of electrostatic interactions in biological systems and in solutions

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Solvation energy in protein folding and binding

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

WHAT IF: a molecular modeling and drug design program

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Hydrogen bond stereochemistry in protein structure and function

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Electrostatic interactions in macromolecules: theory and applications

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Influence of secondary structure on the hydration of serine, threonine and tyrosine residues in proteins

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Analysis of protein main-chain solvation as a function of secondary structure

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Hydrogen bonds involving sulfur atoms in proteins.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

The interdependence of protein surface topography and bound water molecules revealed by surface accessibility and fractal density measures

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Empirical solvation models in the context of conformational energy searches: application to bovine pancreatic trypsin inhibitor

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Atomic solvation parameters applied to molecular dynamics of proteins in solution

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Hydration of amino acid side chains: dependence on secondary structure

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

The Protein Data Bank: a computer-based archival file for macromolecular structures

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

The name is bond--H bond.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

Electrostatic effects in macromolecules: fundamental concepts and practical modeling.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279814

The (i, i + 4) Phe-His interaction studied in an alanine-based alpha-helix

15 August 2018

1 reference

12 December 2020

Solvent structure at a hydrophobic protein surface

1 reference

12 December 2020

Surface topography dependence of biomolecular hydrophobic hydration

1 reference

12 December 2020

Hydration in proteins observed by high-resolution neutron crystallography

1 reference

12 December 2020

Relationship between intramolecular hydrogen bonding and solvent accessibility of side‐chain donors and acceptors in proteins

1 reference

12 December 2020

The inclusion of electrostatic hydration energies in molecular mechanics calculations

1 reference

12 December 2020

Protein hydration in aqueous solution

1 reference

12 December 2020

Surface area included in energy refinement of proteins. A comparative study on atomic solvation parameters

1 reference

12 December 2020

Identifiers

DOI

10.1110/PS.04748404

1 reference

13 November 2017

1 reference

13 November 2017

1 reference

PMCID

2279814