Variegated gene expression caused by cell-specific long-range DNA interactions (Q42857791)

8 November 2017

Variegated gene expression caused by cell-specific long-range DNA interactions (English)

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8 November 2017

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8 November 2017

Elzo de Wit

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Harmen van de Werken

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Harmen van de Werken

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Wouter de Laat

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Wouter de Laat

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author name string

Petra Klous

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8 November 2017

Marieke Simonis

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8 November 2017

Melissa Lopez-Jones

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8 November 2017

Bert Eussen

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8 November 2017

Annelies de Klein

8

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8 November 2017

Robert H Singer

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8 November 2017

26 June 2011

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8 November 2017

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8 November 2017

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8 November 2017

944-951

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8 November 2017

8

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https://scigraph.springernature.com/pub.10.1038/ncb2278

8 November 2017

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cites work

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Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

27 May 2018

1 reference

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Adventitious changes in long-range gene expression caused by polymorphic structural variation and promoter competition

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Nonallelic transvection of multiple imprinted loci is organized by the H19 imprinting control region during germline development

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Cis-ruption mechanisms: disruption of cis-regulatory control as a cause of human genetic disease

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

RAG-1 and ATM coordinate monoallelic recombination and nuclear positioning of immunoglobulin loci

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Nature, nurture, or chance: stochastic gene expression and its consequences

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Virus Infection Induces NF-kappaB-dependent interchromosomal associations mediating monoallelic IFN-beta gene expression

27 May 2018

1 reference

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Global chromatin domain organization of the Drosophila genome

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Transcription and chromatin organization of a housekeeping gene cluster containing an integrated beta-globin locus control region

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Association between the Igk and Igh immunoglobulin loci mediated by the 3' Igk enhancer induces 'decontraction' of the Igh locus in pre-B cells

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

High-resolution mapping and characterization of open chromatin across the genome

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Deletion of the core-H region in mice abolishes the expression of three proximal odorant receptor genes in cis.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

An evaluation of 3C-based methods to capture DNA interactions

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Long-range chromosomal interactions regulate the timing of the transition between poised and active gene expression

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Interchromosomal interactions and olfactory receptor choice

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

A global role for EKLF in definitive and primitive erythropoiesis

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

The erythroid phenotype of EKLF-null mice: defects in hemoglobin metabolism and membrane stability

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Interchromosomal associations between alternatively expressed loci

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Bystander gene activation by a locus control region

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Global regulation of erythroid gene expression by transcription factor GATA-1

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Normalization of cDNA microarray data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Spatial organization of gene expression: the active chromatin hub.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Looping and interaction between hypersensitive sites in the active beta-globin locus

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Long-range chromatin regulatory interactions in vivo

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Spatial preservation of nuclear chromatin architecture during three-dimensional fluorescence in situ hybridization (3D-FISH).

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Capturing chromosome conformation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Nonequivalent nuclear location of immunoglobulin alleles in B lymphocytes.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Transvection and chromosomal trans-interaction effects

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

The beta-globin LCR is not necessary for an open chromatin structure or developmentally regulated transcription of the native mouse beta-globin locus.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Visualization of single RNA transcripts in situ

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Association of transcriptionally silent genes with Ikaros complexes at centromeric heterochromatin

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Position-independent, high-level expression of the human beta-globin gene in transgenic mice

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Developmental regulation of a complete 70-kb human beta-globin locus in transgenic mice

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Chromosomal dynamics at the Shh locus: limb bud-specific differential regulation of competence and active transcription.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Nuclear re-organisation of the Hoxb complex during mouse embryonic development.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Transcription complex stability and chromatin dynamics in vivo.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

The SV40 72 bp repeat preferentially potentiates transcription starting from proximal natural or substitute promoter elements

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3151580

Types of visible variations induced by X-rays inDrosophila

16 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCB2278

Watersheds in digital spaces: an efficient algorithm based on immersion simulations

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCB2278

Transcription factor dosage affects changes in higher order chromatin structure associated with activation of a heterochromatic gene

21 January 2018

1 reference

12 December 2020

Single-cell gene expression profiling

1 reference

12 December 2020

Long-range intrachromosomal interactions in the T helper type 2 cytokine locus

1 reference

12 December 2020

Local and cis effects of the H element on expression of odorant receptor genes in mouse

1 reference

12 December 2020

Identifiers

DOI

10.1038/NCB2278

1 reference

8 November 2017

1 reference

8 November 2017

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