High-throughput sequencing reveals circular substrates for an archaeal RNA ligase (Q42775920)

15 June 2018

title

High-throughput sequencing reveals circular substrates for an archaeal RNA ligase (English)

1 reference

15 June 2018

high-throughput sequencing

main subject

RNA sequencing

0 references

1 reference

Roxane Lestini

4

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Kamel Djaout

object named as

Kamel Djaout

3

0 references

Hubert F Becker

object named as

Hubert F Becker

1

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Hannu Myllykallio

object named as

Hannu Myllykallio

6

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author name string

Alice Héliou

2

1 reference

15 June 2018

Mireille Regnier

5

1 reference

15 June 2018

publication date

9 March 2017

1 reference

15 June 2018

published in

RNA Biology

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15 June 2018

volume

14

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15 June 2018

issue

8

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15 June 2018

page(s)

1075-1085

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15 June 2018

Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis

cites work

1 reference

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Circularization pathway of a bacterial group II intron

16 June 2018

1 reference

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Structure and two-metal mechanism of a eukaryal nick-sealing RNA ligase

16 June 2018

1 reference

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Archaeal Nucleic Acid Ligases and Their Potential in Biotechnology

16 June 2018

1 reference

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Circular RNAs: Identification, biogenesis and function.

16 June 2018

1 reference

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16 June 2018

1 reference

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Circular RNAs: diversity of form and function

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

An extended network of genomic maintenance in the archaeon Pyrococcus abyssi highlights unexpected associations between eucaryotic homologs

16 June 2018

1 reference

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Ribonuclease III mechanisms of double-stranded RNA cleavage

16 June 2018

1 reference

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Cell-type specific features of circular RNA expression

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data.

16 June 2018

1 reference

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Circular RNAs are a large class of animal RNAs with regulatory potency

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Natural RNA circles function as efficient microRNA sponges

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

RNA processing in the minimal organism Nanoarchaeum equitans

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Structure-function analysis of Methanobacterium thermoautotrophicum RNA ligase - engineering a thermostable ATP independent enzyme

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Transcriptome-wide discovery of circular RNAs in Archaea

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Simple and efficient synthesis of 5' pre-adenylated DNA using thermostable RNA ligase

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Archaeal 3'-phosphate RNA splicing ligase characterization identifies the missing component in tRNA maturation

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

BLAST+: architecture and applications

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Archaeal RNA ligase is a homodimeric protein that catalyzes intramolecular ligation of single-stranded RNA and DNA.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

The structure of an archaeal homodimeric ligase which has RNA circularization activity

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Circular box C/D RNAs in Pyrococcus furiosus

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Two reactions of Haloferax volcanii RNA splicing enzymes: joining of exons and circularization of introns

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Archaeal introns: splicing, intercellular mobility and evolution.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Structural characteristics of the stable RNA introns of archaeal hyperthermophiles and their splicing junctions.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Protein-coding introns from the 23S rRNA-encoding gene form stable circles in the hyperthermophilic archaeon Pyrobaculum organotrophum

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Biogenesis of Circular RNAs.

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Circular intronic long noncoding RNAs

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Maturation of the 5S rRNA 5' end is catalyzed in vitro by the endonuclease tRNase Z in the archaeon H. volcanii

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Excision of group II introns as circles.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5680704

Sequential 2′-O-Methylation of Archaeal Pre-tRNATrpNucleotides Is Guided by the Intron-encoded buttrans-Acting Box C/D Ribonucleoprotein of Pre-tRNA

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28277897

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1080/15476286.2017.1302640

1 reference

15 June 2018

PMC publication ID

5680704

1 reference

15 June 2018

PubMed publication ID

28277897

1 reference

15 June 2018