Dormancy within Staphylococcus epidermidis biofilms: a transcriptomic analysis by RNA-seq (Q42774620)

7 November 2017

Dormancy within Staphylococcus epidermidis biofilms: a transcriptomic analysis by RNA-seq (English)

1 reference

Staphylococcus epidermidis

7 November 2017

0 references

0 references

0 references

1 reference

object named as

Staphylococcus epidermidis

1 reference

1 reference

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24504458%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Gerald Pier

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24504458%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Manuel Vilanova

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24504458%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Virginia Carvalhais

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24504458%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Ângela França

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24504458%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

author name string

Filipe Cerca

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24504458%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Nuno Cerca

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24504458%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

language of work or name

English

0 references

publication date

7 February 2014

1 reference

Applied Microbiology and Biotechnology

7 November 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24504458%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

volume

98

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24504458%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

page(s)

2585-2596

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24504458%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24504458%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

4 June 2020

1 reference

https://scigraph.springernature.com/pub.10.1007/s00253-014-5548-3

0 references

cites work

Heterogeneous bacterial persisters and engineering approaches to eliminate them

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Metabolite-enabled eradication of bacterial persisters by aminoglycosides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

An automated method for finding molecular complexes in large protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Differential expression in SAGE: accounting for normal between-library variation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Modulation of cooperativity in Mycobacterium tuberculosis NADPH-ferredoxin reductase: cation-and pH-induced alterations in native conformation and destabilization of the NADP+-binding domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Superoxide dismutases are involved in Candida albicans biofilm persistence against miconazole

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Interconversion between bound and free conformations of LexA orchestrates the bacterial SOS response.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Staphylococcus epidermidis biofilms with higher proportions of dormant bacteria induce a lower activation of murine macrophages.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

SYBR green as a fluorescent probe to evaluate the biofilm physiological state of Staphylococcus epidermidis, using flow cytometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Integration of biological networks and gene expression data using Cytoscape

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Viable but nonculturable bacteria: a survival strategy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Surviving the acid test: responses of gram-positive bacteria to low pH.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Studying bacterial transcriptomes using RNA-seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Transforming clinical microbiology with bacterial genome sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Design and validation issues in RNA-seq experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Role of persister cells in chronic infections: clinical relevance and perspectives on anti-persister therapies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Characterization of MazFSa, an endoribonuclease from Staphylococcus aureus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Bacterial persistence: some new insights into an old phenomenon

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

The KEGG resource for deciphering the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Persister cells and tolerance to antimicrobials

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Characterization and transcriptome analysis of Mycobacterium tuberculosis persisters

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Specialized persister cells and the mechanism of multidrug tolerance in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

New-found fundamentals of bacterial persistence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Persister cells, dormancy and infectious disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Persister cells: molecular mechanisms related to antibiotic tolerance.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Central dogma at the single-molecule level in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Enrichment map: a network-based method for gene-set enrichment visualization and interpretation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Dormancy is not necessary or sufficient for bacterial persistence

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Molecular basis of Staphylococcus epidermidis infections

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Matrix2png: a utility for visualizing matrix data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

False discovery rate, sensitivity and sample size for microarray studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Growth of Mycobacterium tuberculosis in a defined medium is very restricted by acid pH and Mg(2+) levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Protocol dependence of sequencing-based gene expression measurements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Differential gene expression profiling of Staphylococcus aureus cultivated under biofilm and planktonic conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Characterization of a mazEF toxin-antitoxin homologue from Staphylococcus equorum

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Persisters: a distinct physiological state of E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Evidence for persisters in Staphylococcus epidermidis RP62a planktonic cultures and biofilms

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Influence of magnesium ions on biofilm formation by Pseudomonas fluorescens

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Physiological heterogeneity in biofilms

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Characterization and virulence retention of viable but nonculturable Vibrio harveyi.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Differential expression in RNA-seq: a matter of depth

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Viable but non-culturable (VBNC) bacteria: Gene expression in planktonic and biofilm cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Next generation sequencing of microbial transcriptomes: challenges and opportunities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Dual RNA-seq of pathogen and host

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Heterogeneity in Pseudomonas aeruginosa biofilms includes expression of ribosome hibernation factors in the antibiotic-tolerant subpopulation and hypoxia-induced stress response in the metabolically active population

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Gene ontology analysis for RNA-seq: accounting for selection bias

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

A problem of persistence: still more questions than answers?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Dormancy in non-sporulating bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Modulation of poly-N-acetylglucosamine accumulation within mature Staphylococcus epidermidis biofilms grown in excess glucose

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3

Exit from dormancy in microbial organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-014-5548-3