Coarse grained normal mode analysis vs. refined Gaussian Network Model for protein residue-level structural fluctuations (Q42696210)

5 November 2017

Coarse grained normal mode analysis vs. refined Gaussian Network Model for protein residue-level structural fluctuations (English)

1 reference

5 November 2017

Jun-Koo Park

1

1 reference

5 November 2017

Robert Jernigan

series ordinal

2

1 reference

5 November 2017

Zhijun Wu

series ordinal

3

1 reference

5 November 2017

8 January 2013

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Bulletin of Mathematical Biology

5 November 2017

37

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based on heuristic

inferred from page(s)

published in

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5 November 2017

75

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5 November 2017

1

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5 November 2017

124-160

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maintained by WikiProject

5 November 2017

WikiProject Mathematics

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exact match

https://scigraph.springernature.com/pub.10.1007/s11538-012-9797-y

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Statistical measures on residue-level protein structural properties

27 May 2018

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Normal mode analysis with molecular geometry restraints: bridging molecular mechanics and elastic models

27 May 2018

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27 May 2018

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A minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallography

27 May 2018

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Close correspondence between the motions from principal component analysis of multiple HIV-1 protease structures and elastic network modes

27 May 2018

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OPUS-Ca: a knowledge-based potential function requiring only Calpha positions

27 May 2018

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Refinement of NMR-determined protein structures with database derived mean-force potentials

27 May 2018

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Optimization and evaluation of a coarse-grained model of protein motion using x-ray crystal data

27 May 2018

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A coarse-grained normal mode approach for macromolecules: an efficient implementation and application to Ca(2+)-ATPase

27 May 2018

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Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

27 May 2018

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Improving the quality of NMR and crystallographic protein structures by means of a conformational database potential derived from structure databases

27 May 2018

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Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor

27 May 2018

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Dynamics of a small globular protein in terms of low-frequency vibrational modes

27 May 2018

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Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme

27 May 2018

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Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

27 May 2018

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Multiscale modeling of macromolecular conformational changes combining concepts from rigidity and elastic network theory.

27 May 2018

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Accurate and efficient description of protein vibrational dynamics: comparing molecular dynamics and Gaussian models

16 August 2018

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Normal mode analysis of proteins: a comparison of rigid cluster modes with C(alpha) coarse graining.

16 August 2018

1 reference

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Rapid atomic density methods for molecular shape characterization.

16 August 2018

1 reference

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Protein flexibility predictions using graph theory

16 August 2018

1 reference

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Building-block approach for determining low-frequency normal modes of macromolecules.

16 August 2018

1 reference

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Vibrational Dynamics of Folded Proteins: Significance of Slow and Fast Motions in Relation to Function and Stability

16 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS11538-012-9797-Y

Gaussian Dynamics of Folded Proteins

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS11538-012-9797-Y

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS11538-012-9797-Y

Density-cluster NMA: A new protein decomposition technique for coarse-grained normal mode analysis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23296997

inferred from PubMed ID database lookup

12 December 2020

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Identifiers

DOI

10.1007/S11538-012-9797-Y

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release_wcrowdve6baunjj4xq5xyyvptu

5 November 2017

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Fatcat

https://api.fatcat.wiki/v0/release/wcrowdve6baunjj4xq5xyyvptu

mapped directly with Wikidata item

24 November 2022

based on heuristic

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5 November 2017

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