Reproducible Bioconductor workflows using browser-based interactive notebooks and containers. (Q42695276)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29092073%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

title

Reproducible Bioconductor workflows using browser-based interactive notebooks and containers (English)

1 reference

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8 April 2020

1 reference

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7

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8 April 2020

author name string

Reem Almugbel

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29092073%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Ling-Hong Hung

2

1 reference

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8 April 2020

Jiaming Hu

3

1 reference

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8 April 2020

Abeer Almutairy

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29092073%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Nicole Ortogero

5

1 reference

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8 April 2020

Yashaswi Tamta

6

1 reference

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8 April 2020

publication date

1 January 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29092073%20AND%20SRC:MED&resulttype=core&format=json

Journal of the American Medical Informatics Association

8 April 2020

published in

1 reference

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8 April 2020

volume

25

1 reference

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8 April 2020

issue

1

1 reference

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8 April 2020

page(s)

4-12

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describes a project that uses

8 April 2020

Jupyter notebook file

1 reference

The Economics of Reproducibility in Preclinical Research

PubMed Central

cites work

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

Bioconductor: open software development for computational biology and bioinformatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

Opinion: Reproducible research can still be wrong: adopting a prevention approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

Use of application containers and workflows for genomic data analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

IPython: A System for Interactive Scientific Computing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

GW151226: Observation of Gravitational Waves from a 22-Solar-Mass Binary Black Hole Coalescence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

Predicting outcomes in pregnancies of unknown location.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

Pregnancy of unknown location

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

Ectopic pregnancy as a model to identify endometrial genes and signaling pathways important in decidualization and regulated by local trophoblast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

Significance analysis of microarrays applied to the ionizing radiation response

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

Model-based clustering and data transformations for gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

RNA-Seq workflow: gene-level exploratory analysis and differential expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

RNA-Seq transcriptome profiling identifies CRISPLD2 as a glucocorticoid responsive gene that modulates cytokine function in airway smooth muscle cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

Differential expression analysis for sequence count data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

Mass spectrometry based method to increase throughput for kinome analyses using ATP probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

Targeting cancer with kinase inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FJAMIA%2FOCX120

GUIdock-VNC: Using a graphical desktop sharing system to provide a browser-based interface for containerized software

21 January 2018

1 reference

12 December 2020

Pregnancies of unknown location: consensus statement

1 reference

12 December 2020

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 reference

12 December 2020

The accuracy of single serum progesterone measurement in the diagnosis of ectopic pregnancy: a meta-analysis

1 reference

12 December 2020

Large-scale integration of small molecule-induced genome-wide transcriptional responses, Kinome-wide binding affinities and cell-growth inhibition profiles reveal global trends characterizing systems-level drug action

1 reference

12 December 2020

A comprehensive transcriptional portrait of human cancer cell lines

1 reference

12 December 2020

Neural coding in barrel cortex during whisker-guided locomotion

1 reference

12 December 2020

Human chorionic gonadotropin profile for women with ectopic pregnancy

1 reference

12 December 2020

Expectant management of early pregnancies of unknown location: a prospective evaluation of methods to predict spontaneous resolution of pregnancy

1 reference

12 December 2020

Surveillance for ectopic pregnancy--United States, 1970-1989

1 reference

12 December 2020

The discriminatory human chorionic gonadotropin zone for endovaginal sonography: a prospective, randomized study

1 reference

12 December 2020

Identifiers

DOI

10.1093/JAMIA/OCX120

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29092073%20AND%20SRC:MED&resulttype=core&format=json

journals/jamia/AlmugbelHHAOTY18

8 April 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29092073%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

1 reference