Near intron pairs and the metazoan tree (Q42679097)

4 November 2017

Near intron pairs and the metazoan tree (English)

1 reference

4 November 2017

2

1 reference

4 November 2017

Jörg Lehmann

1

1 reference

PubMed ID

23201572

4 November 2017

Veiko Krauss

series ordinal

3

1 reference

4 November 2017

28 November 2012

1 reference

Molecular Phylogenetics and Evolution

4 November 2017

13

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

4 November 2017

66

1 reference

4 November 2017

3

1 reference

4 November 2017

811-823

1 reference

Evidence for a clade of nematodes, arthropods and other moulting animals

4 November 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Large-Scale Parsimony Analysis of Metazoan Indels in Protein-Coding Genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Testing the new animal phylogeny: a phylum level molecular analysis of the animal kingdom

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

BLAST+: architecture and applications

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Three distinct modes of intron dynamics in the evolution of eukaryotes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

A phylogeny of caenorhabditis reveals frequent loss of introns during nematode evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Rodent evolution: back to the root

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Origins of recently gained introns in Caenorhabditis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Solvent exposure imparts similar selective pressures across a range of yeast proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

In search of lost introns

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Tunicates and not cephalochordates are the closest living relatives of vertebrates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Broad phylogenomic sampling improves resolution of the animal tree of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

HaMStR: profile hidden markov model based search for orthologs in ESTs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

MUSCLE: multiple sequence alignment with high accuracy and high throughput

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Higher-level metazoan relationships: recent progress and remaining questions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

THE RETENTION INDEX AND THE RESCALED CONSISTENCY INDEX

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Evidence from 18S ribosomal DNA that the lophophorates are protostome animals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

A twist in time--the evolution of spiral cleavage in the light of animal phylogeny

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Assessing the root of bilaterian animals with scalable phylogenomic methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Spliceosomal introns as tools for genomic and evolutionary analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Phylogenetic mapping of intron positions: a case study of translation initiation factor eIF2gamma

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Near intron positions are reliable phylogenetic markers: an application to holometabolous insects

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Retroposed elements as archives for the evolutionary history of placental mammals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Retroposon insertions provide insights into deep lagomorph evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Clustal W and Clustal X version 2.0

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Some novel intron positions in conserved Drosophila genes are caused by intron sliding or tandem duplication

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Association of intron phases with conservation at splice site sequences and evolution of spliceosomal introns

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Nearly complete rRNA genes assembled from across the metazoan animals: effects of more taxa, a structure-based alignment, and paired-sites evolutionary models on phylogeny reconstruction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

A phylogenomic approach to resolve the arthropod tree of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Scaffolding a Caenorhabditis nematode genome with RNA-seq

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Compositional heterogeneity and phylogenomic inference of metazoan relationships

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Phase distribution of spliceosomal introns: implications for intron origin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Genomic and morphological evidence converge to resolve the enigma of Strepsiptera

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Mathematical elegance with biochemical realism: the covarion model of molecular evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Resolving difficult phylogenetic questions: why more sequences are not enough

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Phylogenomics of eukaryotes: impact of missing data on large alignments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Heterotachy and long-branch attraction in phylogenetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Ancient origin of lactalbumin from lysozyme: analysis of DNA and amino acid sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

The evolutionary gain of spliceosomal introns: sequence and phase preferences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Intron sliding in conserved gene families.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Analysis of evolution of exon-intron structure of eukaryotic genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Resolution of a deep animal divergence by the pattern of intron conservation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Rare genomic characters do not support Coelomata: intron loss/gain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Minimal Mutation Trees of Sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Concatenated analysis sheds light on early metazoan evolution and fuels a modern "urmetazoon" hypothesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Automated generation of heuristics for biological sequence comparison

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

The Amphimedon queenslandica genome and the evolution of animal complexity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Phylogenetic Inference from Restriction Endonuclease Cleavage Site Maps with Particular Reference to the Evolution of Humans and the Apes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Advances in insect phylogeny at the dawn of the postgenomic era.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Challenging the spliceosome machine

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Single-copy nuclear genes resolve the phylogeny of the holometabolous insects

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Common introns within orthologous genes: software and application to plants.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Quantification of insect genome divergence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

Support for the Coelomata clade of animals from a rigorous analysis of the pattern of intron conservation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.11.012

10.1016/J.YMPEV.2012.11.012

7 January 2021

Identifiers

DOI

1 reference

4 November 2017

1 reference

PubMed ID

23201572