Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures (Q42619198)

3 November 2017

Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures (English)

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3 November 2017

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3 November 2017

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Cedric Notredame

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Jose Espinosa-Carrasco

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Jose Espinosa-Carrasco

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Cedrik Magis

Cedrik Magis

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Carsten Kemena

Carsten Kemena

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Giovanni Bussotti

Giovanni Bussotti

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Paolo Di Tommaso

Paolo Di Tommaso

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author name string

Jean-Francois Taly

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PubMed ID

21979275

3 November 2017

Jia-Ming Chang

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3 November 2017

1 November 2011

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1669-1682

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https://scigraph.springernature.com/pub.10.1038/nprot.2011.393

3 November 2017

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Multiple sequence alignment.

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T-Coffee: A novel method for fast and accurate multiple sequence alignment

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Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud

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Alignment uncertainty and genomic analysis

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SSAP: sequential structure alignment program for protein structure comparison

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RNAalifold: improved consensus structure prediction for RNA alignments

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Structure-based prediction of the Saccharomyces cerevisiae SH3-ligand interactions

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Analysis and classification of RNA tertiary structures

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Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

31 March 2020

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Transcription factor map alignment of promoter regions

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The RCSB Protein Data Bank: redesigned web site and web services

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Optimal alignments in linear space

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PubMed

https://pubmed.ncbi.nlm.nih.gov/21979275

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NPROT.2011.393

1 reference

3 November 2017

1 reference

PubMed ID

21979275