Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome (Q42379906)

28 October 2017

Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome (English)

1 reference

28 October 2017

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Janet K Jansson

18

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Jason McDermott

Jason E McDermott

8

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Katharina Riedel

Katharina Riedel

15

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Philippe Schmitt-Kopplin

17

Philippe Schmitt-Kopplin

1 reference

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Rob Knight

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Regina Lamendella

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James T Morton

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Gail Ackermann

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Colin J Brislawn

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Tanja V Maier

1

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Marianna Lucio

2

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28 October 2017

Lang Ho Lee

3

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28 October 2017

Nathan C VerBerkmoes

4

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Jörg Bernhardt

6

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Nathalie Bergeron

9

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Silke S Heinzmann

10

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Antonio González

12

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Ronald M Krauss

16

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17 October 2017

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describes a project that uses

28 October 2017

Cytoscape

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

RStudio

1 reference

18 June 2022

https://europepmc.org/article/PMC/5646248

inferred from PubMed Central ID database lookup

phyloseq

phyloseq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Diets high in resistant starch increase plasma levels of trimethylamine-N-oxide, a gut microbiome metabolite associated with CVD risk

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Impact of dietary resistant starch type 4 on human gut microbiota and immunometabolic functions

28 May 2018

1 reference

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28 May 2018

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28 May 2018

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Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale

28 May 2018

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28 May 2018

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28 May 2018

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28 May 2018

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28 May 2018

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28 May 2018

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Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease

28 May 2018

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28 May 2018

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28 May 2018

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28 May 2018

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28 May 2018

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28 May 2018

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Microbial degradation of complex carbohydrates in the gut

28 May 2018

1 reference

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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

28 May 2018

1 reference

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The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic-anoxic interphases.

28 May 2018

1 reference

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Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon.

28 May 2018

1 reference

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28 May 2018

1 reference

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Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis

28 May 2018

1 reference

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Resistant starches types 2 and 4 have differential effects on the composition of the fecal microbiota in human subjects

28 May 2018

1 reference

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Dominant and diet-responsive groups of bacteria within the human colonic microbiota

28 May 2018

1 reference

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28 May 2018

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Dealing with the unknown: metabolomics and metabolite atlases

28 May 2018

1 reference

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28 May 2018

1 reference

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Mass-spectrometry-based metabolomics: limitations and recommendations for future progress with particular focus on nutrition research

28 May 2018

1 reference

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Metabolomics reveals metabolic biomarkers of Crohn's disease

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

Consumption of the slow-digesting waxy maize starch leads to blunted plasma glucose and insulin response but does not influence energy expenditure or appetite in humans

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

Butyrate improves insulin sensitivity and increases energy expenditure in mice

28 May 2018

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Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine

28 May 2018

1 reference

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Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

28 May 2018

1 reference

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28 May 2018

1 reference

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Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

28 May 2018

1 reference

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28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

Two routes of metabolic cross-feeding between Bifidobacterium adolescentis and butyrate-producing anaerobes from the human gut.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

UniFrac: a new phylogenetic method for comparing microbial communities

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

Insulin-sensitizing effects of dietary resistant starch and effects on skeletal muscle and adipose tissue metabolism

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

Cytoscape: a software environment for integrated models of biomolecular interaction networks

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

KEGG: kyoto encyclopedia of genes and genomes

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

Optimizing a ultrahigh pressure liquid chromatography-time of flight-mass spectrometry approach using a novel sub-2μm core-shell particle for in depth lipidomic profiling of Caenorhabditis elegans

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

A diet high in resistant starch modulates microbiota composition, SCFA concentrations, and gene expression in pig intestine.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

Cell-associated alpha-amylases of butyrate-producing Firmicute bacteria from the human colon.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

Plasma glucose and insulin reduction after consumption of breads varying in amylose content

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

Resistant starch: the effect on postprandial glycemia, hormonal response, and satiety.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

Shotgun metaproteomics of the human distal gut microbiota

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5646248

Hydrolytic action of alpha-amylase on high-amylose starch of low molecular mass

1 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29042495

12 December 2020

inferred from PubMed ID database lookup

Kendrick-analogous network visualisation of ion cyclotron resonance Fourier transform mass spectra: improved options for the assignment of elemental compositions and the classification of organic molecular complexity

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29042495

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1128/MBIO.01343-17

1 reference

28 October 2017

1 reference

28 October 2017

1 reference