Formation of an active site in trans by interaction of two complete Varkud Satellite ribozymes (Q42257025)

19 October 2017

Formation of an active site in trans by interaction of two complete Varkud Satellite ribozymes (English)

1 reference

19 October 2017

0 references

1

1 reference

19 October 2017

Max Byrne

2

1 reference

PMCID

2743049

19 October 2017

David M J Lilley

series ordinal

3

1 reference

PMCID

2743049

19 October 2017

language of work or name

English

0 references

publication date

24 August 2009

1 reference

19 October 2017

1 reference

19 October 2017

15

1 reference

19 October 2017

10

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19 October 2017

1822-1826

1 reference

The complete VS ribozyme in solution studied by small-angle X-ray scattering

19 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

Evidence for proton transfer in the rate-limiting step of a fast-cleaving Varkud satellite ribozyme

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

Efficient, pH-dependent RNA ligation by the VS ribozyme in trans

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

The global structure of the VS ribozyme

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

An efficient ligation reaction promoted by a Varkud Satellite ribozyme with extended 5'- and 3'-termini

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

A long-range pseudoknot is required for activity of the Neurospora VS ribozyme

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from neurospora VS RNA

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

A secondary-structure model for the self-cleaving region of Neurospora VS RNA.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

A guanine nucleobase important for catalysis by the VS ribozyme

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

Role of SLV in SLI substrate recognition by the Neurospora VS ribozyme

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

Identification of separate structural features that affect rate and cation concentration dependence of self-cleavage by the Neurospora VS ribozyme.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

Folding of the natural hammerhead ribozyme is enhanced by interaction of auxiliary elements.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

Functional group requirements in the probable active site of the VS ribozyme

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

The A730 loop is an important component of the active site of the VS ribozyme

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2743049

Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops

17 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19703941

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of the catalytic subdomain of the VS ribozyme and evidence for remarkable sequence tolerance in the active site loop

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19703941

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1261/RNA.1759009

1 reference

19 October 2017

1 reference

19 October 2017

1 reference

PMCID

2743049