Structure and evolution of barley powdery mildew effector candidates (Q42240863)

19 October 2017

Structure and evolution of barley powdery mildew effector candidates (English)

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19 October 2017

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19 October 2017

Laurence V Bindschedler

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19 October 2017

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19 October 2017

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19 October 2017

James C Abbott

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Hans Thordal-Christensen

object named as

Hans Thordal-Christensen

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Ralph Panstruga

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Ralph Panstruga

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author name string

Carsten Pedersen

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19 October 2017

Emiel Ver Loren van Themaat

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19 October 2017

Timothy A Burgis

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19 October 2017

Geraint Barton

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19 October 2017

Xunli Lu

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19 October 2017

Takaki Maekawa

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19 October 2017

Ralf Wessling

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19 October 2017

language of work or name

English

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publication date

11 December 2012

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19 October 2017

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19 October 2017

13

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19 October 2017

694

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describes a project that uses

19 October 2017

edgeR

object named as

EdgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2164-13-694

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cites work

The Top 10 fungal pathogens in molecular plant pathology

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Sequence divergent RXLR effectors share a structural fold conserved across plant pathogenic oomycete species

26 October 2017

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Using hierarchical clustering of secreted protein families to classify and rank candidate effectors of rust fungi

26 October 2017

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Automated tertiary structure prediction with accurate local model quality assessment using the IntFOLD-TS method

26 October 2017

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Cell biology of the plant-powdery mildew interaction.

26 October 2017

1 reference

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Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust

26 October 2017

1 reference

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Structures of Phytophthora RXLR Effector Proteins: A CONSERVED BUT ADAPTABLE FOLD UNDERPINS FUNCTIONAL DIVERSITY

26 October 2017

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FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins

26 October 2017

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

26 October 2017

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Obligate biotrophy features unraveled by the genomic analysis of rust fungi

26 October 2017

1 reference

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The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction

26 October 2017

1 reference

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Origins, evolution, and phenotypic impact of new genes.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Powdery mildew fungal effector candidates share N-terminal Y/F/WxC-motif

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

The evolution of gene duplications: classifying and distinguishing between models

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Coevolution between a family of parasite virulence effectors and a class of LINE-1 retrotransposons

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

In planta proteomics and proteogenomics of the biotrophic barley fungal pathogen Blumeria graminis f. sp. hordei

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Rapidly evolving genes in pathogens: methods for detecting positive selection and examples among fungi, bacteria, viruses and protists

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

26 October 2017

Fungal effector proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Emerging concepts in effector biology of plant-associated organisms.

26 October 2017

1 reference

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Contrasting rates of evolution in Pm3 loci from three wheat species and rice

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach

26 October 2017

1 reference

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Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

26 October 2017

1 reference

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DISULFIND: a disulfide bonding state and cysteine connectivity prediction server

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Selecton: a server for detecting evolutionary forces at a single amino-acid site

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Gene duplication: the genomic trade in spare parts

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Establishment of biotrophy by parasitic fungi and reprogramming of host cells for disease resistance

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Multiple sequence alignment with the Clustal series of programs

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Genomics of phytopathogenic fungi and the development of bioinformatic resources

26 October 2017

1 reference

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An efficient algorithm for large-scale detection of protein families

26 October 2017

1 reference

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Getting the most from PSI-BLAST.

26 October 2017

1 reference

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InterProScan--an integration platform for the signature-recognition methods in InterPro

26 October 2017

1 reference

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Gene identification in the obligate fungal pathogen Blumeria graminis by expressed sequence tag analysis.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

The PSIPRED protein structure prediction server

26 October 2017

1 reference

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Codon-substitution models for heterogeneous selection pressure at amino acid sites

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Contribution of disulfide bonds to the conformational stability and catalytic activity of ribonuclease A

26 October 2017

1 reference

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Codon usage tabulated from international DNA sequence databases: status for the year 2000

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Protein secondary structure prediction based on position-specific scoring matrices

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

SINE-like properties of a highly repetitive element in the genome of the obligate parasitic fungus Erysiphe graminis f.sp. hordei.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Accurate and sensitive peptide identification with Mascot Percolator

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Characterization of the transcript of a new class of retroposon-type repetitive element cloned from the powdery mildew fungus, Erysiphe graminis

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Powdery mildew genomes in the crosshairs. 2nd International Powdery Mildew Workshop and 3rd New Phytologist Workshop, in Zürich, Switzerland, February 2012.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Comparative sequence analysis of wheat and barley powdery mildew fungi reveals gene colinearity, dates divergence and indicates host-pathogen co-evolution.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

A proteomics study of barley powdery mildew haustoria

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Identification of a protein from rust fungi transferred from haustoria into infected plant cells.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

A detailed look at 7 million years of genome evolution in a 439 kb contiguous sequence at the barley Hv-eIF4E locus: recombination, rearrangements and repeats.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Evaluation of methods for determination of a reconstructed history of gene sequence evolution.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

A Comprehensive Analysis of Genes Encoding Small Secreted Proteins Identifies Candidate Effectors inMelampsora larici-populina(Poplar Leaf Rust)

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Proteogenomics and in silico structural and functional annotation of the barley powdery mildew Blumeria graminis f. sp. hordei

1 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

1 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3582587

Intrinsic disorder prediction from the analysis of multiple protein fold recognition models

1 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23231440

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-13-694

1 reference

Dimensions Publication ID

19 October 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-13-694

1 reference

19 October 2017

1 reference