The presence of an RNA:DNA hybrid that is prone to slippage promotes termination by T7 RNA polymerase (Q42209333)

18 October 2017

The presence of an RNA:DNA hybrid that is prone to slippage promotes termination by T7 RNA polymerase (English)

1 reference

18 October 2017

Vadim Molodtsov

1

1 reference

18 October 2017

Michael Anikin

series ordinal

2

1 reference

18 October 2017

William T McAllister

series ordinal

3

1 reference

18 October 2017

language of work or name

English

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publication date

27 June 2014

1 reference

Journal of Molecular Biology

18 October 2017

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18 October 2017

426

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18 October 2017

18

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18 October 2017

3095-3107

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describes a project that uses

18 October 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4172313/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Bacteriophage λ N protein inhibits transcription slippage by Escherichia coli RNA polymerase

1 reference

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Isolation and characterization of RNA polymerase rpoB mutations that alter transcription slippage during elongation in Escherichia coli

26 October 2017

1 reference

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Structural basis of RNA polymerase II backtracking, arrest and reactivation

26 October 2017

1 reference

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Regulation of gene expression by reiterative transcription

26 October 2017

1 reference

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An allosteric mechanism of Rho-dependent transcription termination

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Transcription elongation complex stability: the topological lock

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Identification of proteins associated with the yeast mitochondrial RNA polymerase by tandem affinity purification.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Dynamics and stability of individual base pairs in two homologous RNA-DNA hybrids

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Applied force reveals mechanistic and energetic details of transcription termination

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

An Allosteric Path to Transcription Termination

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Direct spectroscopic study of reconstituted transcription complexes reveals that intrinsic termination is driven primarily by thermodynamic destabilization of the nucleic acid framework

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Dissociation of halted T7 RNA polymerase elongation complexes proceeds via a forward-translocation mechanism

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Probing conformational changes in T7 RNA polymerase during initiation and termination by using engineered disulfide linkages

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Transcriptional slippage in bacteria: distribution in sequenced genomes and utilization in IS element gene expression

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Structure of a T7 RNA polymerase elongation complex at 2.9 A resolution

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Transcription termination and anti-termination in E. coli

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Fluorescence characterization of the transcription bubble in elongation complexes of T7 RNA polymerase

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNA

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

The mechanism of intrinsic transcription termination.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Sequences homologous to yeast mitochondrial and bacteriophage T3 and T7 RNA polymerases are widespread throughout the eukaryotic lineage

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

DNA-RNA hybrid duplexes containing oligo(dA:rU) sequences are exceptionally unstable and may facilitate termination of transcription

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Processivity in early stages of transcription by T7 RNA polymerase

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Structure of an alternating-B DNA helix and its relationship to A-tract DNA

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Transcriptional slippage occurs during elongation at runs of adenine or thymine in Escherichia coli

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Initial bubble collapse plays a key role in the transition to elongation in T7 RNA polymerase

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Pausing and termination by bacteriophage T7 RNA polymerase

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

On the evolution of the single-subunit RNA polymerases

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Yeast mitochondrial RNA polymerase is homologous to those encoded by bacteriophages T3 and T7.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Forward translocation is the natural pathway of RNA release at an intrinsic terminator

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Crystallization and preliminary crystallographic analysis of T7 RNA polymerase elongation complex.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Shortening of RNA:DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Effects of substitutions in a conserved DX(2)GR sequence motif, found in many DNA-dependent nucleotide polymerases, on transcription by T7 RNA polymerase

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Kinetic modeling and simulation of in vitro transcription by phage T7 RNA polymerase.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Characterization of halted T7 RNA polymerase elongation complexes reveals multiple factors that contribute to stability

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4172313

Termination and slippage by bacteriophage T7 RNA polymerase

17 August 2018

1 reference

12 December 2020

Characterization of two types of termination signal for bacteriophage T7 RNA polymerase

1 reference

12 December 2020

Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes

1 reference

12 December 2020

The stability of abortively cycling T7 RNA polymerase complexes depends upon template conformation

1 reference

12 December 2020

Rapid mutagenesis and purification of phage RNA polymerases

1 reference

12 December 2020

T7 RNA polymerase elongation complex structure and movement

1 reference

12 December 2020

Major conformational changes occur during the transition from an initiation complex to an elongation complex by T7 RNA polymerase

1 reference

12 December 2020

The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination

1 reference

12 December 2020

Mechanism of intrinsic transcription termination and antitermination

1 reference

12 December 2020

10.1016/J.JMB.2014.06.012

Identifiers

DOI

1 reference

18 October 2017

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18 October 2017

1 reference