Testing significance relative to a fold-change threshold is a TREAT. (Q42183575)

18 October 2017

Testing significance relative to a fold-change threshold is a TREAT. (English)

1 reference

18 October 2017

2

1 reference

18 October 2017

Davis J McCarthy

1

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language of work or name

English

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publication date

28 January 2009

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18 October 2017

7

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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18 October 2017

25

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18 October 2017

765-771

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18 October 2017

6

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A case study on choosing normalization methods and test statistics for two-channel microarray data

18 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

Transcriptome analysis of the normal human mammary cell commitment and differentiation process

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

Empirical array quality weights in the analysis of microarray data

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

Identification and functional significance of genes regulated by structurally different histone deacetylase inhibitors

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

DAVID: Database for Annotation, Visualization, and Integrated Discovery

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

Significance analysis of microarrays applied to the ionizing radiation response

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

Use of a cDNA microarray to analyse gene expression patterns in human cancer

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

Parallel human genome analysis: microarray-based expression monitoring of 1000 genes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

Functional and metabolic remodelling in GLUT4-deficient hearts confers hyper-responsiveness to substrate intervention

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

Significance testing for small microarray experiments

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

A random variance model for detection of differential gene expression in small microarray experiments.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2654802

Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project

17 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19176553

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTP053

1 reference

journals/bioinformatics/McCarthyS09

18 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

18 October 2017

1 reference

PMCID

2654802