Identification of a complex genetic network underlying Saccharomyces cerevisiae colony morphology. (Q42146678)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22882838%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

title

Identification of a complex genetic network underlying Saccharomyces cerevisiae colony morphology (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22882838%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

main subject

Saccharomyces cerevisiae

1 reference

8

1 reference

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10 February 2020

Elisa van der Zande

3

1 reference

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10 February 2020

Wim Meert

5

1 reference

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10 February 2020

Kevin J Verstrepen

9

1 reference

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10 February 2020

author name string

Karin Voordeckers

1

1 reference

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10 February 2020

Dries De Maeyer

2

1 reference

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10 February 2020

Marcelo D Vinces

4

1 reference

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10 February 2020

Lore Cloots

6

1 reference

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10 February 2020

Owen Ryan

7

1 reference

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10 February 2020

language of work or name

English

0 references

publication date

13 September 2012

1 reference

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10 February 2020

published in

Molecular Microbiology

1 reference

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10 February 2020

volume

86

1 reference

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10 February 2020

page(s)

225-239

1 reference

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10 February 2020

issue

1

1 reference

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describes a project that uses

10 February 2020

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3470922

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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29 May 2018

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29 May 2018

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Shedding of the mucin-like flocculin Flo11p reveals a new aspect of fungal adhesion regulation

29 May 2018

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Dissecting BAR domain function in the yeast Amphiphysins Rvs161 and Rvs167 during endocytosis

29 May 2018

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Systematic screens of a Candida albicans homozygous deletion library decouple morphogenetic switching and pathogenicity

29 May 2018

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Genotype to phenotype: a complex problem

29 May 2018

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Multiple signals converge on a differentiation MAPK pathway.

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29 May 2018

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A profile of differentially abundant proteins at the yeast cell periphery during pseudohyphal growth

29 May 2018

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Environmental and genetic determinants of colony morphology in yeast

29 May 2018

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Control of high osmolarity signalling in the yeast Saccharomyces cerevisiae

29 May 2018

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Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast

29 May 2018

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29 May 2018

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Epigenetic and conventional regulation is distributed among activators of FLO11 allowing tuning of population-level heterogeneity in its expression

29 May 2018

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Genetic and epigenetic mechanisms underlying cell-surface variability in protozoa and fungi

29 May 2018

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The tRNA modification complex elongator regulates the Cdc42-dependent mitogen-activated protein kinase pathway that controls filamentous growth in yeast

29 May 2018

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29 May 2018

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29 May 2018

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29 May 2018

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29 May 2018

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Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity

29 May 2018

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29 May 2018

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29 May 2018

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29 May 2018

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29 May 2018

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The yeast GID complex, a novel ubiquitin ligase (E3) involved in the regulation of carbohydrate metabolism

29 May 2018

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Analysis of the yeast kinome reveals a network of regulated protein localization during filamentous growth

29 May 2018

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Integration of global signaling pathways, cAMP-PKA, MAPK and TOR in the regulation of FLO11.

29 May 2018

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Identification of novel activation mechanisms for FLO11 regulation in Saccharomyces cerevisiae

29 May 2018

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Large-scale analysis of yeast filamentous growth by systematic gene disruption and overexpression.

29 May 2018

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Mat formation in Saccharomyces cerevisiae requires nutrient and pH gradients.

29 May 2018

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Function and regulation in MAPK signaling pathways: lessons learned from the yeast Saccharomyces cerevisiae

29 May 2018

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The CORVET tethering complex interacts with the yeast Rab5 homolog Vps21 and is involved in endo-lysosomal biogenesis

29 May 2018

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Enrichment or depletion of a GO category within a class of genes: which test?

29 May 2018

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Actin regulation in endocytosis

29 May 2018

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29 May 2018

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29 May 2018

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The Opi1p transcription factor affects expression of FLO11, mat formation, and invasive growth in Saccharomyces cerevisiae

29 May 2018

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29 May 2018

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29 May 2018

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29 May 2018

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29 May 2018

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29 May 2018

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29 May 2018

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29 May 2018

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29 May 2018

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29 May 2018

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Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex

29 May 2018

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Constitutive activation of the pH-responsive Rim101 pathway in yeast mutants defective in late steps of the MVB/ESCRT pathway

29 May 2018

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29 May 2018

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29 May 2018

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29 May 2018

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Physiological regulation of yeast cell death in multicellular colonies is triggered by ammonia.

29 May 2018

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Regulation of the osmoregulatory HOG MAPK cascade in yeast

29 May 2018

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Rvb1p/Rvb2p recruit Arp5p and assemble a functional Ino80 chromatin remodeling complex

29 May 2018

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Mss11p is a central element of the regulatory network that controls FLO11 expression and invasive growth in Saccharomyces cerevisiae.

29 May 2018

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Genetic and epigenetic regulation of the FLO gene family generates cell-surface variation in yeast

29 May 2018

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Nbp2 targets the Ptc1-type 2C Ser/Thr phosphatase to the HOG MAPK pathway

29 May 2018

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Urmylation: A Ubiquitin-like Pathway that Functions during Invasive Growth and Budding in Yeast

29 May 2018

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Composition and function of the eukaryotic N-terminal acetyltransferase subunits

29 May 2018

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Nat3p and Mdm20p are required for function of yeast NatB Nalpha-terminal acetyltransferase and of actin and tropomyosin

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

The sensing of nutritional status and the relationship to filamentous growth in Saccharomyces cerevisiae.

29 May 2018

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Regulated portals of entry into the cell

29 May 2018

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Snf1 kinases with different beta-subunit isoforms play distinct roles in regulating haploid invasive growth

29 May 2018

1 reference

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The transcription factor Rim101p governs ion tolerance and cell differentiation by direct repression of the regulatory genes NRG1 and SMP1 in Saccharomyces cerevisiae.

29 May 2018

1 reference

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Ammonia pulses and metabolic oscillations guide yeast colony development.

29 May 2018

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Network motifs: simple building blocks of complex networks

29 May 2018

1 reference

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Transcriptional regulatory networks in Saccharomyces cerevisiae

29 May 2018

1 reference

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Meeting the consumer challenge through genetically customized wine-yeast strains

29 May 2018

1 reference

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Nuclear actin and actin-related proteins in chromatin remodeling.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Sequence-based approach for identification of cell wall proteins in Saccharomyces cerevisiae

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Differentiated gene expression in cells within yeast colonies

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Anatomical analysis of Saccharomyces cerevisiae stalk-like structures reveals spatial organization and cell specialization

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Sfl1 functions via the co-repressor Ssn6-Tup1 and the cAMP-dependent protein kinase Tpk2.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Bakers' yeast, a model for fungal biofilm formation.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Interplay of intrinsic and extrinsic signals in yeast differentiation

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Alkaline response genes of Saccharomyces cerevisiae and their relationship to the RIM101 pathway

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Organization and cell-cell interaction in starved Saccharomyces cerevisiae colonies

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Gene ontology: tool for the unification of biology

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Apoptosis in yeast--a monocellular organism exhibits altruistic behaviour

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

A protein conjugation system in yeast with homology to biosynthetic enzyme reaction of prokaryotes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Crosstalk between the Ras2p-controlled mitogen-activated protein kinase and cAMP pathways during invasive growth of Saccharomyces cerevisiae

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Signal transduction by MAP kinase cascades in budding yeast

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

MAP kinase and cAMP filamentation signaling pathways converge on the unusually large promoter of the yeast FLO11 gene

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

A role for the Pkc1 MAP kinase pathway of Saccharomyces cerevisiae in bud emergence and identification of a putative upstream regulator

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Dissection of filamentous growth by transposon mutagenesis in Saccharomyces cerevisiae

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

FLO11, a yeast gene related to the STA genes, encodes a novel cell surface flocculin

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Saccharomyces cerevisiae S288C has a mutation in FLO8, a gene required for filamentous growth

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Muc1, a mucin-like protein that is regulated by Mss10, is critical for pseudohyphal differentiation in yeast

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Identification of functionally related genes that stimulate early meiotic gene expression in yeast.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Genealogy of principal strains of the yeast genetic stock center

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

More powerful procedures for multiple significance testing

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Unipolar cell divisions in the yeast S. cerevisiae lead to filamentous growth: regulation by starvation and RAS

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

WAVe: web analysis of the variome.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Sporulation patterning and invasive growth in wild and domesticated yeast colonies

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Expression of the yeast aquaporin Aqy2 affects cell surface properties under the control of osmoregulatory and morphogenic signalling pathways.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Architecture of developing multicellular yeast colony: spatio-temporal expression of Ato1p ammonium exporter.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Metabolic diversification of cells during the development of yeast colonies.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

The role of actin, fimbrin and endocytosis in growth of hyphae in Aspergillus nidulans

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Use of within-array replicate spots for assessing differential expression in microarray experiments.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3470922

Bicarbonate-mediated social communication stimulates meiosis and sporulation of Saccharomyces cerevisiae

17 August 2018

1 reference

12 December 2020

Acidification of vacuoles is required for autophagic degradation in the yeast, Saccharomyces cerevisiae

1 reference

12 December 2020

Ammonia mediates communication between yeast colonies

1 reference

12 December 2020

A steady state model for the transcriptional regulation of filamentous growth in Saccharomyces cerevisiae

1 reference

12 December 2020

Domestication of wild Saccharomyces cerevisiae is accompanied by changes in gene expression and colony morphology

1 reference

12 December 2020

10.1111/J.1365-2958.2012.08192.X

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22882838%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22882838%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22882838%20AND%20SRC:MED&resulttype=core&format=json