Fuzzy clustering of physicochemical and biochemical properties of amino acids (Q42146396)

17 October 2017

Fuzzy clustering of physicochemical and biochemical properties of amino acids (English)

1 reference

Sanghamitra Bandyopadhyay

17 October 2017

Indrajit Saha

1

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Ujjwal Maulik

object named as

Ujjwal Maulik

series ordinal

2

0 references

0 references

Dariusz Plewczynski

series ordinal

4

object named as

Dariusz Plewczynski

1 reference

PMCID

3397137

17 October 2017

language of work or name

1 reference

13 October 2011

1 reference

17 October 2017

1 reference

17 October 2017

43

1 reference

17 October 2017

583-594

1 reference

17 October 2017

2

1 reference

https://scigraph.springernature.com/pub.10.1007/s00726-011-1106-9

17 October 2017

0 references

cites work

VoteDock: consensus docking method for prediction of protein-ligand interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

PROlocalizer: integrated web service for protein subcellular localization prediction

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

A study of entropy/clarity of genetic sequences using metric spaces and fuzzy sets.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

AMS 3.0: prediction of post-translational modifications.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

DomSVR: domain boundary prediction with support vector regression from sequence information alone

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Using ensemble of classifiers for predicting HIV protease cleavage sites in proteins.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

AAindex: amino acid index database, progress report 2008

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Amino acid quantitative structure property relationship database: a web-based platform for quantitative investigations of amino acids

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Effect of data normalization on fuzzy clustering of DNA microarray data

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Prediction of protein cellular attributes using pseudo-amino acid composition

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

AAindex: amino acid index database

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

AAindex: Amino Acid Index Database.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Cluster analysis of amino acid indices for prediction of protein structure and function

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

A novel method for similarity analysis and protein sub-cellular localization prediction.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Distance-dependent classification of amino acids by information theory.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Use of amino acid composition to predict epitope residues of individual antibodies.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Identification of functionally diverse lipocalin proteins from sequence information using support vector machine.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Variable context Markov chains for HIV protease cleavage site prediction.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Protein sumoylation sites prediction based on two-stage feature selection.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Using multidimensional patterns of amino acid attributes for QSAR analysis of peptides.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Prediction of protein folding rates from primary sequences using hybrid sequence representation.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

In silico quantitative prediction of peptides binding affinity to human MHC molecule: an intuitive quantitative structure-activity relationship approach.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

RNACluster: An integrated tool for RNA secondary structure comparison and clustering.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

AAIndexLoc: predicting subcellular localization of proteins based on a new representation of sequences using amino acid indices.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

AutoMotif Server for prediction of phosphorylation sites in proteins using support vector machine: 2007 update.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Predicting the protein SUMO modification sites based on Properties Sequential Forward Selection (PSFS).

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

ProLoc: prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Assessing different classification methods for virtual screening.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Plasmod-PPI: A web-server predicting complex biopolymer targets in plasmodium with entropy measures of protein–protein interactions

17 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS00726-011-1106-9

A Coefficient of Agreement for Nominal Scales

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS00726-011-1106-9

Silhouettes: A graphical aid to the interpretation and validation of cluster analysis

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS00726-011-1106-9

Protein classification using texture descriptors extracted from the protein backbone image

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3397137

Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins

3 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21993537

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S00726-011-1106-9

1 reference

PMCID

3397137

Dimensions Publication ID

17 October 2017

0 references

1 reference

17 October 2017

1 reference

PMCID

3397137