Growth phase-dependent control of transcription start site selection and gene expression by nanoRNAs. (Q42092083)

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6 February 2020

title

Growth phase-dependent control of transcription start site selection and gene expression by nanoRNAs (English)

1 reference

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6 February 2020

7

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6 February 2020

author name string

Irina O Vvedenskaya

1

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6 February 2020

Josh S Sharp

2

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6 February 2020

Seth R Goldman

3

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6 February 2020

Pinal N Kanabar

4

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6 February 2020

Jonathan Livny

5

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6 February 2020

Simon L Dove

6

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6 February 2020

publication date

1 July 2012

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6 February 2020

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6 February 2020

volume

26

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6 February 2020

issue

13

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6 February 2020

page(s)

1498-1507

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Identification of a novel nanoRNase in Bartonella

6 February 2020

cites work

1 reference

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The copper-inducible ComR (YcfQ) repressor regulates expression of ComC (YcfR), which affects copper permeability of the outer membrane of Escherichia coli.

29 May 2018

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NanoRNAs: a class of small RNAs that can prime transcription initiation in bacteria

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403017

NanoRNAs prime transcription initiation in vivo

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403017

Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis

29 May 2018

1 reference

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Regulatory RNAs in bacteria

29 May 2018

1 reference

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The Crystal Structure of the Escherichia coli RNase E Apoprotein and a Mechanism for RNA Degradation

29 May 2018

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Protein translation and cell death: the role of rare tRNAs in biofilm formation and in activating dormant phage killer genes

29 May 2018

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Characterization of nucleotide pools as a function of physiological state in Escherichia coli

29 May 2018

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Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal

29 May 2018

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YtqI from Bacillus subtilis has both oligoribonuclease and pAp-phosphatase activity

29 May 2018

1 reference

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YcfR (BhsA) influences Escherichia coli biofilm formation through stress response and surface hydrophobicity.

29 May 2018

1 reference

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Attenuation control of pyrG expression in Bacillus subtilis is mediated by CTP-sensitive reiterative transcription

29 May 2018

1 reference

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Catalytic activation of multimeric RNase E and RNase G by 5'-monophosphorylated RNA

29 May 2018

1 reference

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Coordinate regulation of bacterial virulence genes by a novel adenylate cyclase-dependent signaling pathway

29 May 2018

1 reference

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Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

29 May 2018

1 reference

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The CafA protein required for the 5'-maturation of 16 S rRNA is a 5'-end-dependent ribonuclease that has context-dependent broad sequence specificity.

29 May 2018

1 reference

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Oligoribonuclease is an essential component of the mRNA decay pathway

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403017

Regulation of upp expression in Escherichia coli by UTP-sensitive selection of transcriptional start sites coupled with UTP-dependent reiterative transcription

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403017

Oligonucleotides complementary to a promoter over the region -8...+2 as transcription primers for E. coli RNA polymerase

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403017

The nature of mutants in the lac promoter region

29 May 2018

1 reference

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A novel oligoribonuclease of Escherichia coli. II. Mechanism of action

29 May 2018

1 reference

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RNA polymerase. Limit cognate primer for initiation and stable ternary complex formation.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403017

Control of rRNA expression by small molecules is dynamic and nonredundant

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403017

Regulation of pyrBI operon expression in Escherichia coli by UTP-sensitive reiterative RNA synthesis during transcriptional initiation.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403017

Regulation of codBA operon expression in Escherichia coli by UTP-dependent reiterative transcription and UTP-sensitive transcriptional start site switching

17 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22751503

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GAD.192732.112

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22751503%20AND%20SRC:MED&resulttype=core&format=json

6 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22751503%20AND%20SRC:MED&resulttype=core&format=json

6 February 2020

1 reference

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