A coarse-grained alpha-carbon protein model with anisotropic hydrogen-bonding. (Q42084202)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17879350%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

title

A coarse-grained alpha-carbon protein model with anisotropic hydrogen-bonding (English)

1 reference

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7 January 2020

2

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7 January 2020

author name string

Eng-Hui Yap

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17879350%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

Teresa Head-Gordon

series ordinal

3

1 reference

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7 January 2020

language of work or name

English

0 references

publication date

1 February 2008

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7 January 2020

1 reference

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7 January 2020

volume

70

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7 January 2020

issue

3

1 reference

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7 January 2020

page(s)

626-638

1 reference

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Determining the critical nucleus and mechanism of fibril elongation of the Alzheimer's Abeta(1-40) peptide.

7 January 2020

cites work

1 reference

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Early events in protein folding explored by rapid mixing methods

30 May 2018

1 reference

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Protein folding by distributed computing and the denatured state ensemble.

30 May 2018

1 reference

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Balancing energy and entropy: a minimalist model for the characterization of protein folding landscapes

30 May 2018

1 reference

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Influence of denatured and intermediate states of folding on protein aggregation

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Rapid mixing methods for exploring the kinetics of protein folding

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology.

30 May 2018

1 reference

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Intermediates and the folding of proteins L and G.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Orientational potentials extracted from protein structures improve native fold recognition

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Principles of protein folding, misfolding and aggregation

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Coarse-grained sequences for protein folding and design

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

alpha-helix formation: discontinuous molecular dynamics on an intermediate-resolution protein model

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Matching simulation and experiment: a new simplified model for simulating protein folding

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Mechanisms and kinetics of beta-hairpin formation

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Redesigning the hydrophobic core of a model beta-sheet protein: destabilizing traps through a threading approach

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Virtual atom representation of hydrogen bonds in minimal off-lattice models of alpha helices: effect on stability, cooperativity and kinetics

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Contact order, transition state placement and the refolding rates of single domain proteins.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

An early intermediate in the folding reaction of the B1 domain of protein G contains a native-like core

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Theory of protein folding: the energy landscape perspective

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Three-dimensional solution structure of an immunoglobulin light chain-binding domain of protein L. Comparison with the IgG-binding domains of protein G

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Funnels, pathways, and the energy landscape of protein folding: a synthesis

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Fast folding of a prototypic polypeptide: the immunoglobulin binding domain of streptococcal protein G.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Theoretical Studies of Protein Folding

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Metastability of the folded states of globular proteins

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Thermodynamic analysis of the folding of the streptococcal protein G IgG-binding domains B1 and B2: why small proteins tend to have high denaturation temperatures

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Kinetic analysis of folding and unfolding the 56 amino acid IgG-binding domain of streptococcal protein G.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Fast and slow intermediate accumulation and the initial barrier mechanism in protein folding

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Protein engineering study of protein L by simulation

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Critical role of beta-hairpin formation in protein G folding.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

A breakdown of symmetry in the folding transition state of protein L

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Kinetics of Folding of the IgG Binding Domain of Peptostreptoccocal Protein L

1 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3474853

Folding dynamics of the B1 domain of protein G explored by ultrarapid mixing

1 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17879350

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Optimized Monte Carlo data analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17879350

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Kinetics and thermodynamics of folding of a de novo designed four-helix bundle protein

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17879350

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/PROT.21515

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17879350%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17879350%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

PubMed publication ID

17879350

1 reference