DNA sequence correlations shape nonspecific transcription factor-DNA binding affinity (Q41989913)

14 October 2017

DNA sequence correlations shape nonspecific transcription factor-DNA binding affinity (English)

1 reference

14 October 2017

Itamar Sela

1

1 reference

PMCID

3127192

14 October 2017

David B Lukatsky

series ordinal

2

1 reference

PMCID

3127192

14 October 2017

language of work or name

English

0 references

publication date

1 July 2011

1 reference

14 October 2017

1 reference

14 October 2017

101

1 reference

14 October 2017

1

1 reference

14 October 2017

160-166

1 reference

Nucleosome-mediated cooperativity between transcription factors

14 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Physics of protein-DNA interactions: mechanisms of facilitated target search

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Nonspecifically bound proteins spin while diffusing along DNA.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Diversity and complexity in DNA recognition by transcription factors

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Slide into action: dynamic shuttling of HIV reverse transcriptase on nucleic acid substrates

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Tumor suppressor p53 slides on DNA with low friction and high stability

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

A high-resolution atlas of nucleosome occupancy in yeast

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Probing transcription factor dynamics at the single-molecule level in a living cell

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

How proteins search for their specific sites on DNA: the role of DNA conformation

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

How do site-specific DNA-binding proteins find their targets?

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Specificity, free energy and information content in protein-DNA interactions

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Facilitated target location in biological systems

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

The effects of intersegmental transfers on target location by proteins.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Predicting expression patterns from regulatory sequence in Drosophila segmentation.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Diffusion in correlated random potentials, with applications to DNA.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3127192

Facilitated search of proteins on DNA: correlations are important

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21723826

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Single molecule measurements of repressor protein 1D diffusion on DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21723826

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein--DNA interactions: reaching and recognizing the targets

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21723826

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.BPJ.2011.04.037

1 reference

14 October 2017

0 references

1 reference

14 October 2017

1 reference

PMCID

3127192