Atomistic simulations of pore formation and closure in lipid bilayers (Q41900883)

13 October 2017

Atomistic simulations of pore formation and closure in lipid bilayers (English)

1 reference

13 October 2017

1

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31 May 2020

author name string

Nicolas Sapay

series ordinal

2

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31 May 2020

D Peter Tieleman

series ordinal

3

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31 May 2020

language of work or name

English

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publication date

1 January 2014

1 reference

13 October 2017

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31 May 2020

volume

106

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31 May 2020

issue

1

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31 May 2020

page(s)

210-219

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GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

31 May 2020

cites work

1 reference

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5 June 2018

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Nanoscale imaging reveals laterally expanding antimicrobial pores in lipid bilayers

5 June 2018

1 reference

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Cytochrome c causes pore formation in cardiolipin-containing membranes

5 June 2018

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Common mechanism unites membrane poration by amyloid and antimicrobial peptides

5 June 2018

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Free energy of translocating an arginine-rich cell-penetrating peptide across a lipid bilayer suggests pore formation

5 June 2018

1 reference

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Buried lysine, but not arginine, titrates and alters transmembrane helix tilt.

5 June 2018

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Determination of membrane-insertion free energies by molecular dynamics simulations

5 June 2018

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5 June 2018

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Hydrophobicity scales: a thermodynamic looking glass into lipid-protein interactions

5 June 2018

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Entropy and the driving force for the filling of carbon nanotubes with water

5 June 2018

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The expanding scope of antimicrobial peptide structures and their modes of action

5 June 2018

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Side-chain hydrophobicity scale derived from transmembrane protein folding into lipid bilayers

5 June 2018

1 reference

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Physical determinants of β-barrel membrane protein folding in lipid vesicles

5 June 2018

1 reference

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Defect-mediated trafficking across cell membranes: insights from in silico modeling

5 June 2018

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Molecular simulations of lipid flip-flop in the presence of model transmembrane helices

5 June 2018

1 reference

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pH (low) insertion peptide (pHLIP) inserts across a lipid bilayer as a helix and exits by a different path

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Alternative mechanisms for the interaction of the cell-penetrating peptides penetratin and the TAT peptide with lipid bilayers

5 June 2018

1 reference

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110 years of the Meyer-Overton rule: predicting membrane permeability of gases and other small compounds

5 June 2018

1 reference

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Lipids on the move: simulations of membrane pores, domains, stalks and curves

5 June 2018

1 reference

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How translocons select transmembrane helices

5 June 2018

1 reference

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Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations.

5 June 2018

1 reference

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Membrane lipids: where they are and how they behave

5 June 2018

1 reference

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Distribution of amino acids in a lipid bilayer from computer simulations.

5 June 2018

1 reference

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Structural determinants of water permeability through the lipid membrane.

5 June 2018

1 reference

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Molecular dynamics simulations suggest a mechanism for translocation of the HIV-1 TAT peptide across lipid membranes

5 June 2018

1 reference

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Studies on anticancer activities of antimicrobial peptides

5 June 2018

1 reference

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On the thermodynamic stability of a charged arginine side chain in a transmembrane helix

5 June 2018

1 reference

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GROMACS: fast, flexible, and free

5 June 2018

1 reference

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1,2-diacyl-phosphatidylcholine flip-flop measured directly by sum-frequency vibrational spectroscopy

5 June 2018

1 reference

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Cell-penetrating peptides: mechanism and kinetics of cargo delivery

5 June 2018

1 reference

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Antimicrobial peptides: pore formers or metabolic inhibitors in bacteria?

5 June 2018

1 reference

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Recognition of transmembrane helices by the endoplasmic reticulum translocon.

5 June 2018

1 reference

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The molecular basis of electroporation

5 June 2018

1 reference

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Nanoelectropulse-induced phosphatidylserine translocation

5 June 2018

1 reference

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Molecular dynamics simulations of hydrophilic pores in lipid bilayers

5 June 2018

1 reference

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Simulation of pore formation in lipid bilayers by mechanical stress and electric fields

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Diversity of antimicrobial peptides and their mechanisms of action

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Experimentally determined hydrophobicity scale for proteins at membrane interfaces

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Permeation of protons, potassium ions, and small polar molecules through phospholipid bilayers as a function of membrane thickness

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Inside-outside transitions of phospholipids in vesicle membranes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Transbilayer and interbilayer phospholipid exchange in dimyristoylphosphatidylcholine/dimyristoylphosphatidylethanolamine large unilamellar vesicles

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Chloride flux in bilayer membranes. Chloride permeability in aqueous dispersions of single-walled, bilayer vesicles

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Molecular dynamics simulations of lipid membrane electroporation.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Transfer of arginine into lipid bilayers is nonadditive.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Life cycle of an electropore: field-dependent and field-independent steps in pore creation and annihilation

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Molecular view of cholesterol flip-flop and chemical potential in different membrane environments.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Flip-flop of phospholipids in vesicles: kinetic analysis with time-resolved small-angle neutron scattering

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Thermodynamic analysis of the effect of cholesterol on dipalmitoylphosphatidylcholine lipid membranes

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Ion transport through chemically induced pores in protein-free phospholipid membranes

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Nanopore-facilitated, voltage-driven phosphatidylserine translocation in lipid bilayers--in cells and in silico

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Nanopore formation and phosphatidylserine externalization in a phospholipid bilayer at high transmembrane potential

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Translocation of phospholipids and dithionite permeability in liquid-ordered and liquid-disordered membranes

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

Water Defect and Pore Formation in Atomistic and Coarse-Grained Lipid Membranes: Pushing the Limits of Coarse Graining

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3907245

The effect of chain length and lipid phase transitions on the selective permeability properties of liposomes

3 November 2018

1 reference

12 December 2020

Free energy of a trans-membrane pore calculated from atomistic molecular dynamics simulations

1 reference

12 December 2020

Entropy and dynamics of water in hydration layers of a bilayer

1 reference

12 December 2020

Antimicrobial peptides in action

1 reference

12 December 2020

Lipids out of equilibrium: energetics of desorption and pore mediated flip-flop

1 reference

12 December 2020

10.1016/J.BPJ.2013.11.4486

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DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24411253%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

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31 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24411253%20AND%20SRC:MED&resulttype=core&format=json