Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity (Q41863185)

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scientific article published on March 2005

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English	Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity	scientific article published on March 2005

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scholarly article

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8 January 2020

Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity (English)

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Escherichia coli

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Volker F. Wendisch

4

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Regine Hengge

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author name string

Harald Weber

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Johanna Heuveling

3

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publication date

1 March 2005

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Journal of Bacteriology

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1591-1603

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5

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8 January 2020

GadY, a small-RNA regulator of acid response genes in Escherichia coli

1 reference

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WebLogo: A Sequence Logo Generator

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Transcriptome analysis of Crp-dependent catabolite control of gene expression in Escherichia coli

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Multiple stress signal integration in the regulation of the complex sigma S-dependent csiD-ygaF-gabDTP operon in Escherichia coli

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Acid resistance in Escherichia coli.

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Nucleotides from -16 to -12 determine specific promoter recognition by bacterial sigmaS-RNA polymerase.

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Genes of the GadX-GadW regulon in Escherichia coli

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Regulatory network of acid resistance genes in Escherichia coli

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Stationary phase gene regulation: what makes an Escherichia coli promoter sigmaS-selective?

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5 June 2018

Collaborative regulation of Escherichia coli glutamate-dependent acid resistance by two AraC-like regulators, GadX and GadW (YhiW)

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Network motifs: simple building blocks of complex networks

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Adaptation to famine: a family of stationary-phase genes revealed by microarray analysis

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Promoter use by sigma 38 (rpoS) RNA polymerase. Amino acid clusters for DNA binding and isomerization

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5 June 2018

Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase

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1 reference

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Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase system

1 reference

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DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide

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Sigma38 (rpoS) RNA polymerase promoter engagement via -10 region nucleotides

1 reference

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Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS.

1 reference

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BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

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Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation

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Coactivation of the RpoS-dependent proP P2 promoter by fis and cyclic AMP receptor protein

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sigma factor selectivity of Escherichia coli RNA polymerase: role for CRP, IHF and lrp transcription factors

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One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

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Transcription activation by catabolite activator protein (CAP)

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5 June 2018

Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid

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Control of acid resistance in Escherichia coli

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1 reference

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5 June 2018

Interplay between global regulators of Escherichia coli: effect of RpoS, Lrp and H-NS on transcription of the gene osmC.

1 reference

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Combining evidence using p-values: application to sequence homology searches

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Molecular analysis of the regulation of csiD, a carbon starvation-inducible gene in Escherichia coli that is exclusively dependent on sigma s and requires activation by cAMP-CRP.

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Contribution of individual promoters in the ddlB-ftsZ region to the transcription of the essential cell-division gene ftsZ in Escherichia coli.

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5 June 2018

Effects of nutrition and growth rate on Lrp levels in Escherichia coli

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5 June 2018

Identification of sigma S-dependent genes associated with the stationary-phase acid-resistance phenotype of Shigella flexneri

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Regulatory characteristics and promoter analysis of csiE, a stationary phase-inducible gene under the control of sigma S and the cAMP-CRP complex in Escherichia coli.

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5 June 2018

Lrp, a major regulatory protein in Escherichia coli, bends DNA and can organize the assembly of a higher-order nucleoprotein structure.

1 reference

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Identification and characterization of the tktB gene encoding a second transketolase in Escherichia coli K-12

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5 June 2018

Complex transcriptional control of the sigma s-dependent stationary-phase-induced and osmotically regulated osmY (csi-5) gene suggests novel roles for Lrp, cyclic AMP (cAMP) receptor protein-cAMP complex, and integration host factor in the stationar

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Interactions of the nucleoid-associated DNA-binding protein H-NS with the regulatory region of the osmotically controlled proU operon of Escherichia coli.

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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based on heuristic

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Identifiers

10.1128/JB.187.5.1591-1603.2005

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Europe PubMed Central

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8 January 2020

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Europe PubMed Central

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8 January 2020

1 reference

Europe PubMed Central

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8 January 2020

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