CalMaTe: a method and software to improve allele-specific copy number of SNP arrays for downstream segmentation (Q41837426)

12 October 2017

CalMaTe: a method and software to improve allele-specific copy number of SNP arrays for downstream segmentation (English)

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12 October 2017

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12 October 2017

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12 October 2017

Maria Ortiz-Estevez

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12 October 2017

Ander Aramburu

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2

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12 October 2017

Henrik Bengtsson

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12 October 2017

language of work or name

English

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publication date

9 May 2012

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12 October 2017

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12 October 2017

28

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12 October 2017

1793-1794

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Integrated genomic analyses of ovarian carcinoma

12 October 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381965

Parent-specific copy number in paired tumor-normal studies using circular binary segmentation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381965

Estimation of parent specific DNA copy number in tumors using high-density genotyping arrays

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381965

Allele-specific copy number analysis of tumors

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381965

A multilevel model to address batch effects in copy number estimation using SNP arrays.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381965

ACNE: a summarization method to estimate allele-specific copy numbers for Affymetrix SNP arrays

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381965

TumorBoost: normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381965

A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381965

Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381965

High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381965

dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381965

Chromosome aberrations in solid tumors

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3381965

10.1093/BIOINFORMATICS/BTS248

6 June 2018

Identifiers

DOI

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journals/bioinformatics/Ortiz-EstevezABNR12

12 October 2017

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DBLP Dataset 2021-01-02

28 January 2021

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12 October 2017

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