Complex multi-enhancer contacts captured by genome architecture mapping. (Q41818680)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28273065%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

title

Complex multi-enhancer contacts captured by genome architecture mapping (English)

1 reference

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5 April 2020

17

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5 April 2020

Robert A Beagrie

1

1 reference

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5 April 2020

Antonio Scialdone

2

1 reference

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5 April 2020

Ines de Santiago

8

1 reference

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5 April 2020

Miguel R Branco

10

1 reference

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5 April 2020

Mario Nicodemi

16

1 reference

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5 April 2020

author name string

Markus Schueler

3

1 reference

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5 April 2020

Dorothee C A Kraemer

4

1 reference

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5 April 2020

Mita Chotalia

5

1 reference

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5 April 2020

Sheila Q Xie

6

1 reference

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5 April 2020

Mariano Barbieri

7

1 reference

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5 April 2020

Liron-Mark Lavitas

9

1 reference

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5 April 2020

James Fraser

11

1 reference

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5 April 2020

Josée Dostie

12

1 reference

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5 April 2020

Laurence Game

13

1 reference

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5 April 2020

Niall Dillon

14

1 reference

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5 April 2020

Paul A W Edwards

15

1 reference

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5 April 2020

language of work or name

English

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publication date

8 March 2017

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5 April 2020

1 reference

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5 April 2020

volume

543

1 reference

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5 April 2020

page(s)

519-524

1 reference

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5 April 2020

issue

7646

1 reference

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describes a project that uses

5 April 2020

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5366070/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/nature21411

0 references

cites work

Gene activation by metazoan enhancers: Diverse mechanisms stimulate distinct steps of transcription.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Polymer physics of chromosome large-scale 3D organisation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Transcriptional termination in mammals: Stopping the RNA polymerase II juggernaut

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Dynamic enhancer-gene body contacts during transcription elongation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Condensin-driven remodelling of X chromosome topology during dosage compensation.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

3D imaging of Sox2 enhancer clusters in embryonic stem cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Topologically associating domains are stable units of replication-timing regulation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

A comparative encyclopedia of DNA elements in the mouse genome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Chromosome conformation maps in fission yeast reveal cell cycle dependent sub nuclear structure.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Large-scale chromatin organization: the good, the surprising, and the still perplexing

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Organization of the mitotic chromosome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

The statistical-mechanics of chromosome conformation capture

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Master transcription factors and mediator establish super-enhancers at key cell identity genes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Disclosure of a structural milieu for the proximity ligation reveals the elusive nature of an active chromatin hub.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

A complex network framework for unbiased statistical analyses of DNA-DNA contact maps

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

HiCNorm: removing biases in Hi-C data via Poisson regression

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Complexity of chromatin folding is captured by the strings and binders switch model

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Iterative correction of Hi-C data reveals hallmarks of chromosome organization

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Genome-wide copy number analysis of single cells.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Spatial partitioning of the regulatory landscape of the X-inactivation centre

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Topological domains in mammalian genomes identified by analysis of chromatin interactions

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Polycomb associates genome-wide with a specific RNA polymerase II variant, and regulates metabolic genes in ESCs

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Three-dimensional folding and functional organization principles of the Drosophila genome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Hi-C: a method to study the three-dimensional architecture of genomes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

BEDTools: a flexible suite of utilities for comparing genomic features

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Poised transcription factories prime silent uPA gene prior to activation.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

The interaction of NSBP1/HMGN5 with nucleosomes in euchromatin counteracts linker histone-mediated chromatin compaction and modulates transcription.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Neural differentiation of embryonic stem cells in vitro: a road map to neurogenesis in the embryo

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Thermodynamic pathways to genome spatial organization in the cell nucleus

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Advances in imaging the interphase nucleus using thin cryosections

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

The Interaction of Selection and Linkage. I. General Considerations; Heterotic Models

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Common themes and cell type specific variations of higher order chromatin arrangements in the mouse

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Active genes dynamically colocalize to shared sites of ongoing transcription

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Clustering of multiple specific genes and gene-rich R-bands around SC-35 domains: evidence for local euchromatic neighborhoods

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Conversion of embryonic stem cells into neuroectodermal precursors in adherent monoculture

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Capturing chromosome conformation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

A technique for ultracryotomy of cell suspensions and tissues

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Happy mapping: a proposal for linkage mapping the human genome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

The structure of organelles of the endocytic pathway in hydrated cryosections of cultured cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Coverage-based rarefaction and extrapolation: standardizing samples by completeness rather than size.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Fixation-induced redistribution of hyperphosphorylated RNA polymerase II in the nucleus of human cells

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Regional specialization in human nuclei: visualization of discrete sites of transcription by RNA polymerase III.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5366070

Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells

18 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21411

Bridging the Resolution Gap: Imaging the Same Transcription Factories in Cryosections by Light and Electron Microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21411

Changes in chromosome organization during PHA-activation of resting human lymphocytes measured by cryo-FISH

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21411

Global identification of yeast chromosome interactions using Genome conformation capture

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE21411

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NATURE21411

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28273065%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28273065%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

1 reference