Towards accurate imputation of quantitative genetic interactions (Q41807312)

12 October 2017

Towards accurate imputation of quantitative genetic interactions (English)

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12 October 2017

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12 October 2017

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Nevan J Krogan

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12 October 2017

Ron Shamir

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12 October 2017

10 December 2009

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12 October 2017

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12 October 2017

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12 October 2017

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12 October 2017

R140

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https://scigraph.springernature.com/pub.10.1186/gb-2009-10-12-r140

12 October 2017

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Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum

6 June 2018

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Functional organization of the S. cerevisiae phosphorylation network

6 June 2018

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Predicting genetic interactions with random walks on biological networks

6 June 2018

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Up-to-date catalogues of yeast protein complexes

6 June 2018

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A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing

6 June 2018

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Functional targeting of DNA damage to a nuclear pore-associated SUMO-dependent ubiquitin ligase

6 June 2018

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Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes

6 June 2018

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Mining protein networks for synthetic genetic interactions

6 June 2018

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Finding friends and enemies in an enemies-only network: a graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions

6 June 2018

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Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.

6 June 2018

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The GET complex mediates insertion of tail-anchored proteins into the ER membrane

6 June 2018

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From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions

6 June 2018

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Functional maps of protein complexes from quantitative genetic interaction data

6 June 2018

1 reference

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Defining genetic interaction

6 June 2018

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Integrating physical and genetic maps: from genomes to interaction networks

6 June 2018

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Pathway redundancy and protein essentiality revealed in the Saccharomyces cerevisiae interaction networks

6 June 2018

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A new method to measure the semantic similarity of GO terms

6 June 2018

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Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map

6 June 2018

1 reference

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Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions

6 June 2018

1 reference

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A strategy for extracting and analyzing large-scale quantitative epistatic interaction data

6 June 2018

1 reference

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Global analysis of gene function in yeast by quantitative phenotypic profiling

6 June 2018

1 reference

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Gene function prediction from congruent synthetic lethal interactions in yeast

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

A DNA integrity network in the yeast Saccharomyces cerevisiae

6 June 2018

1 reference

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BioGRID: a general repository for interaction datasets

6 June 2018

1 reference

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Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Systematic interpretation of genetic interactions using protein networks

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Combining biological networks to predict genetic interactions

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Data mining in bioinformatics using Weka

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Global mapping of the yeast genetic interaction network

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Unique and Redundant Roles for HOG MAPK Pathway Components as Revealed by Whole-Genome Expression Analysis

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Global analysis of protein localization in budding yeast

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Assessing experimentally derived interactions in a small world

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Network motifs in the transcriptional regulation network of Escherichia coli

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Systematic genetic analysis with ordered arrays of yeast deletion mutants

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Remodeling of yeast genome expression in response to environmental changes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Genomic expression programs in the response of yeast cells to environmental changes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Functional discovery via a compendium of expression profiles

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Gene ontology: tool for the unification of biology

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

SGD: Saccharomyces Genome Database

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

MIPS: a database for protein sequences and complete genomes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Genome-wide prediction of C. elegans genetic interactions

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Modular epistasis in yeast metabolism.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

Global architecture of genetic interactions on the protein network.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

A Robust Toolkit for Functional Profiling of the Yeast Genome

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2812947

10.1186/GB-2009-10-12-R140

2 December 2018

Identifiers

DOI

1 reference

PMC publication ID

2812947

Dimensions Publication ID

12 October 2017

0 references

1 reference

PMC publication ID

2812947

12 October 2017

PubMed publication ID

20003301

1 reference

PMC publication ID

2812947