spongeScan: A web for detecting microRNA binding elements in lncRNA sequences (Q41723104)

8 October 2017

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences (English)

1 reference

8 October 2017

1 reference

4

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8 October 2017

5

1 reference

8 October 2017

3

Toni Gabaldón

1 reference

8 October 2017

Pedro Furió-Tarí

1

1 reference

PMCID

4987953

8 October 2017

Sonia Tarazona

series ordinal

2

1 reference

8 October 2017

19 May 2016

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8 October 2017

Nucleic Acids Research

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8 October 2017

44

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8 October 2017

W176-80

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8 October 2017

W1

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Creative Commons Attribution-NonCommercial 4.0 International

8 October 2017

start time

14 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

A survey of best practices for RNA-seq data analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987953

DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987953

Predicting effective microRNA target sites in mammalian mRNAs

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987953

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987953

HTSeq--a Python framework to work with high-throughput sequencing data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987953

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987953

miRBase: annotating high confidence microRNAs using deep sequencing data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987953

Genome Maps, a new generation genome browser

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987953

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987953

Circular RNAs are a large class of animal RNAs with regulatory potency

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987953

An integrated encyclopedia of DNA elements in the human genome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987953

Combinatorial microRNA target predictions

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987953

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987953

MicroRNA targets in Drosophila

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987953

6 June 2018

Identifiers

DOI

10.1093/NAR/GKW443

1 reference

journals/nar/Furio-TariTGEC16

8 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

8 October 2017

1 reference

PMCID

4987953