Genetic Code Optimization for Cotranslational Protein Folding: Codon Directional Asymmetry Correlates with Antiparallel Betasheets, tRNA Synthetase Classes (Q41472888)

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scientific article published on 12 August 2017

Language	Label	Description	Also known as
English	Genetic Code Optimization for Cotranslational Protein Folding: Codon Directional Asymmetry Correlates with Antiparallel Betasheets, tRNA Synthetase Classes	scientific article published on 12 August 2017

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

Genetic Code Optimization for Cotranslational Protein Folding: Codon Directional Asymmetry Correlates with Antiparallel Betasheets, tRNA Synthetase Classes (English)

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

protein folding

0 references

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28924459%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

author name string

Hervé Seligmann

1

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28924459%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

publication date

12 August 2017

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Europe PubMed Central

PMC publication ID

1 October 2017

Computational and Structural Biotechnology Journal

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28924459%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

15

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28924459%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

412-424

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28924459%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

DEVELOPMENTAL CORRELATES OF GENOME SIZE IN PLETHODONTID SALAMANDERS AND THEIR IMPLICATIONS FOR GENOME EVOLUTION.

1 reference

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Genetic coding and united-hypercomplex systems in the models of algebraic biology

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Optimization of amino acid replacement costs by mutational pressure in bacterial genomes

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1 reference

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Expression and Function of Different Guanine-Plus-Cytosine Content 16S rRNA Genes in Haloarcula hispanica at Different Temperatures.

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Synonymous Codons: Choose Wisely for Expression

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Chimeric mitochondrial peptides from contiguous regular and swinger RNA.

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Insights into Cotranslational Nascent Protein Behavior from Computer Simulations.

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Codon Distribution in Error-Detecting Circular Codes

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A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding

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Translation of mitochondrial swinger RNAs according to tri-, tetra- and pentacodons

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Circular code motifs near the ribosome decoding center

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Codon expansion and systematic transcriptional deletions produce tetra-, pentacoded mitochondrial peptides

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Swinger RNAs with sharp switches between regular transcription and transcription systematically exchanging ribonucleotides: Case studies

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Protein functional features are reflected in the patterns of mRNA translation speed

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Optimization of Mutation Pressure in Relation to Properties of Protein-Coding Sequences in Bacterial Genomes

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Cooperative folding of a polytopic α-helical membrane protein involves a compact N-terminal nucleus and nonnative loops.

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The maximal C(3) self-complementary trinucleotide circular code X in genes of bacteria, eukaryotes, plasmids and viruses

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Timing is everything: unifying codon translation rates and nascent proteome behavior

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Bijective transformation circular codes and nucleotide exchanging RNA transcription

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Tetracoding increases with body temperature in Lepidosauria

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Putative anticodons in mitochondrial tRNA sidearm loops: Pocketknife tRNAs?

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Pocketknife tRNA hypothesis: anticodons in mammal mitochondrial tRNA side-arm loops translate proteins?

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Triplex DNA:RNA, 3'-to-5' inverted RNA and protein coding in mitochondrial genomes

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Systematic asymmetric nucleotide exchanges produce human mitochondrial RNAs cryptically encoding for overlapping protein coding genes.

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In vivo translation rates can substantially delay the cotranslational folding of the Escherichia coli cytosolic proteome

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Synonymous codon usage influences the local protein structure observed

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Directionality in protein fold prediction

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Rare codons cluster

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Coevolution theory of the genetic code at age thirty

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The ambush hypothesis: hidden stop codons prevent off-frame gene reading

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Mitochondrial genome variation in eastern Asia and the peopling of Japan

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

The case for an error minimizing standard genetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Global analysis of protein expression in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Translational selection and yeast proteome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Cost-minimization of amino acid usage.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Base compositions of genes encoding alpha-actin and lactate dehydrogenase-A from differently adapted vertebrates show no temperature-adaptive variation in G + C content

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Optimality of the genetic code with respect to protein stability and amino-acid frequencies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Selection at the amino acid level can influence synonymous codon usage: implications for the study of codon adaptation in plastid genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Orientation of the tRNA anticodon in the ribosomal P-site: quantitative footprinting with U33-modified, anticodon stem and loop domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Multiple test procedures other than Bonferroni's deserve wider use.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

The genetic code is one in a million

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

On error minimization in a sequential origin of the standard genetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

What's wrong with Bonferroni adjustments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Aminoacyl-tRNA synthetases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Cotranslational protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Protein secondary structural types are differentially coded on messenger RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Cell size predicts morphological complexity in the brains of frogs and salamanders

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Contribution of cotranslational folding to the rate of formation of native protein structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Codon selection in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Codon usage in bacteria: correlation with gene expressivity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

The molecular basis for the genetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Order in the genetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Codon usage and tRNA content in unicellular and multicellular organisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

An algorithm for protein secondary structure prediction based on class prediction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Rumer's rule and transformation in the context of the co-operative symmetry of the genetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

The extension reached by the minimization of the polarity distances during the evolution of the genetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Nonuniform size distribution of nascent globin peptides, evidence for pause localization sites, and a cotranslational protein-folding model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Site of aminoacylation of tRNAs from Escherichia coli with respect to the 2'- or 3'-hydroxyl group of the terminal adenosine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

A co-evolution theory of the genetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Conformational preferences of amino acids in globular proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Antiparallel and parallel β-strands differ in amino acid residue preferences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Prediction of the Secondary Structure of Proteins from their Amino Acid Sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

11 June 2018

Fast Protein Translation Can Promote Co- and Posttranslational Folding of Misfolding-Prone Proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Cotranslational folding of spectrin domains via partially structured states

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Natural mitochondrial proteolysis confirms transcription systematically exchanging/deleting nucleotides, peptides coded by expanded codons.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

A new integrated symmetrical table for genetic codes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Some pungent arguments against the physico-chemical theories of the origin of the genetic code and corroborating the coevolution theory.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

The role of crossover operator in evolutionary-based approach to the problem of genetic code optimization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Cotranslational protein folding on the ribosome monitored in real time.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Cotranslational folding of deeply knotted proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Sharp switches between regular and swinger mitochondrial replication: 16S rDNA systematically exchanging nucleotides A<->T+C<->G in the mitogenome of Kamimuria wangi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

On models of the genetic code generated by binary dichotomic algorithms.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Mitochondrial swinger replication: DNA replication systematically exchanging nucleotides and short 16S ribosomal DNA swinger inserts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Circular code motifs in the ribosome decoding center

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Species radiation by DNA replication that systematically exchanges nucleotides?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Revisiting the physico-chemical hypothesis of code origin: an analysis based on code-sequence coevolution in a finite population

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Kinetic modelling indicates that fast-translating codons can coordinate cotranslational protein folding by avoiding misfolded intermediates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Animal evolution: trilobites on speed.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Circular code motifs in transfer RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

An alternative look at code evolution: using non-canonical codes to evaluate adaptive and historic models for the origin of the genetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Putative mitochondrial polypeptides coded by expanded quadruplet codons, decoded by antisense tRNAs with unusual anticodons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Sequence criteria for the anti-parallel character of protein beta-strands.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Prediction of variable translation rate effects on cotranslational protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Why has nature invented three stop codons of DNA and only one start codon?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

The genetic code and its optimization for kinetic energy conservation in polypeptide chains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

An overlapping genetic code for frameshifted overlapping genes in Drosophila mitochondria: antisense antitermination tRNAs UAR insert serine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Circular code motifs in transfer and 16S ribosomal RNAs: a possible translation code in genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Two genetic codes, one genome: frameshifted primate mitochondrial genes code for additional proteins in presence of antisense antitermination tRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Error compensation of tRNA misacylation by codon-anticodon mismatch prevents translational amino acid misinsertion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Pathogenic mutations in antisense mitochondrial tRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Avoidance of antisense, antiterminator tRNA anticodons in vertebrate mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

The ambush hypothesis at the whole-organism level: Off frame, 'hidden' stops in vertebrate mitochondrial genes increase developmental stability.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Positive correlations between molecular and morphological rates of evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Mitochondrial tRNAs as light strand replication origins: similarity between anticodon loops and the loop of the light strand replication origin predicts initiation of DNA replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

A thermodynamic basis for prebiotic amino acid synthesis and the nature of the first genetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Ambush hypothesis revisited: Evidences for phylogenetic trends

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Strong short-range correlations and dichotomic codon classes in coding DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Arachnid relationships based on mitochondrial genomes: asymmetric nucleotide and amino acid bias affects phylogenetic analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

A comparative method for studying adaptation to a randomly evolving environment.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Hybridization between mitochondrial heavy strand tDNA and expressed light strand tRNA modulates the function of heavy strand tDNA as light strand replication origin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Inverted replication of vertebrate mitochondria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Cost minimization of ribosomal frameshifts.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

An asymmetric underlying rule in the assignment of codons: possible clue to a quick early evolution of the genetic code via successive binary choices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Mitochondrial tRNA sequences as unusual replication origins: pathogenic implications for Homo sapiens.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Error propagation across levels of organization: from chemical stability of ribosomal RNA to developmental stability.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Possible multiple origins of replication in primate mitochondria: Alternative role of tRNA sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Correlations between genomic GC levels and optimal growth temperatures are not 'robust'.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Codon usage bias and mutation constraints reduce the level of error minimization of the genetic code.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Codon usage decreases the error minimization within the genetic code.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

The complete mitochondrial genome of the articulate brachiopod Terebratalia transversa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Asymmetrical directional mutation pressure in the mitochondrial genome of mammals.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

Specific correlations between relative synonymous codon usage and protein secondary structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

19 August 2018

The Origin of the Genetic Code: Matter of Metabolism or Physicochemical Determinism?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

30 September 2018

The lack of foundation in the mechanism on which are based the physico-chemical theories for the origin of the genetic code is counterposed to the credible and natural mechanism suggested by the coevolution theory

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

4 November 2018

The Self-Referential Genetic Code is Biologic and Includes the Error Minimization Property

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

4 November 2018

Mitochondrial Gene Rearrangements and Partial Genome Duplications Detected by Multigene Asymmetric Compositional Bias Analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5591391

2 December 2018

Chemical interactions between amino acid and RNA: multiplicity of the levels of specificity explains origin of the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mitochondrial replication origin stability and propensity of adjacent tRNA genes to form putative replication origins increase developmental stability in Lizards

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enrichment of longevity phenotype in mtDNA haplogroups D4b2b, D4a, and D5 in the Japanese population

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cryptic tRNAs in chaetognath mitochondrial genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the origin of the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cotranslational protein folding reveals the selective use of synonymous codons along the coding sequence of a low expression gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The coevolution theory of the origin of the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogeny of genetic codes and punctuation codes within genetic codes

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic code correlations: amino acids and their anticodon nucleotides

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Periodical changes of amino acid reactivity within the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Frameshift signals in genes associated with the circular code

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A complementary circular code in the protein coding genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Linguistic analysis of protein folding

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon systematization in the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A quantitative measure of error minimization in the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Systematic exchanges between nucleotides: Genomic swinger repeats and swinger transcription in human mitochondria

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the evolution of redundancy in genetic codes

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Symmetries by base substitutions in the genetic code predict 2(') or 3(') aminoacylation of tRNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cotranslational folding of proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metabolic basis for the self-referential genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A model study of protein nascent chain and cotranslational folding using hydrophobic-polar residues

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence of rare codon clusters within Escherichia coli coding regions

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Swinger RNA self-hybridization and mitochondrial non-canonical swinger transcription, transcription systematically exchanging nucleotides

1 reference

https://pubmed.ncbi.nlm.nih.gov/28924459

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.CSBJ.2017.08.001

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28924459%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28924459%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28924459%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

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