Eukaryotic ribosomal RNA determinants of aminoglycoside resistance and their role in translational fidelity. (Q41355898)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18003936%20AND%20SRC:MED&resulttype=core&format=json

26 December 2019

title

Eukaryotic ribosomal RNA determinants of aminoglycoside resistance and their role in translational fidelity (English)

1 reference

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26 December 2019

1

1 reference

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26 December 2019

author name string

David M Bedwell

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18003936%20AND%20SRC:MED&resulttype=core&format=json

26 December 2019

language of work or name

English

0 references

publication date

14 November 2007

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26 December 2019

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26 December 2019

volume

14

1 reference

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26 December 2019

issue

1

1 reference

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26 December 2019

page(s)

148-157

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Engineering the rRNA decoding site of eukaryotic cytosolic ribosomes in bacteria

26 December 2019

cites work

1 reference

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An arc of unpaired "hinge bases" facilitates information exchange among functional centers of the ribosome

1 October 2017

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A genetic model to investigate drug-target interactions at the ribosomal decoding site

1 October 2017

1 reference

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Binding of neomycin-class aminoglycoside antibiotics to mutant ribosomes with alterations in the A site of 16S rRNA.

1 October 2017

1 reference

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Two conformational states in the crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site

1 October 2017

1 reference

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Distinct paths to stop codon reassignment by the variant-code organisms Tetrahymena and Euplotes

1 October 2017

1 reference

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Analysis of the contribution of individual substituents in 4,6-aminoglycoside-ribosome interaction

1 October 2017

1 reference

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Structural insights into translational fidelity

1 October 2017

1 reference

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23S rRNA base pair 2057-2611 determines ketolide susceptibility and fitness cost of the macrolide resistance mutation 2058A-->G.

1 October 2017

1 reference

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GTP hydrolysis by eRF3 facilitates stop codon decoding during eukaryotic translation termination

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Leaky termination at premature stop codons antagonizes nonsense-mediated mRNA decay in S. cerevisiae

1 October 2017

1 reference

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The Molecular Basis for A‐Site Mutations Conferring Aminoglycoside Resistance: Relationship between Ribosomal Susceptibility and X‐ray Crystal Structures

1 October 2017

1 reference

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Role of 16S rRNA Helix 44 in Ribosomal Resistance to Hygromycin B

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Crystal structure of geneticin bound to a bacterial 16S ribosomal RNA A site oligonucleotide

1 October 2017

1 reference

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Selection of tRNA by the ribosome requires a transition from an open to a closed form

1 October 2017

1 reference

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The involvement of RNA in ribosome function

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Crystal structure of a complex between the aminoglycoside tobramycin and an oligonucleotide containing the ribosomal decoding a site

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Recognition of cognate transfer RNA by the 30S ribosomal subunit

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Crystal structure of the ribosome at 5.5 A resolution

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Structural origins of aminoglycoside specificity for prokaryotic ribosomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Structure of a eukaryotic decoding region A-site RNA

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Genetic interaction between yeast Saccharomyces cerevisiae release factors and the decoding region of 18 S rRNA.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Complete deletion of yeast chromosomal rDNA repeats and integration of a new rDNA repeat: use of rDNA deletion strains for functional analysis of rDNA promoter elements in vivo

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

X-ray crystal structures of 70S ribosome functional complexes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Recognition of the codon-anticodon helix by ribosomal RNA.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Basis for prokaryotic specificity of action of aminoglycoside antibiotics

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Effect of mutations in the A site of 16 S rRNA on aminoglycoside antibiotic-ribosome interaction.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Structural origins of gentamicin antibiotic action

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Mutations in eukaryotic 18S ribosomal RNA affect translational fidelity and resistance to aminoglycoside antibiotics

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Mutations in 16S ribosomal RNA disrupt antibiotic--RNA interactions.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Dominant lethal mutations in a conserved loop in 16S rRNA.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Ribosome biogenesis in yeast.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Phenotypic suppression of nonsense mutants in yeast by aminoglycoside antibiotics

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Phenotypic suppression and misreading in Saccharomyces cerevisiae

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Eukaryotic release factor 1 phosphorylation by CK2 protein kinase is dynamic but has little effect on the efficiency of translation termination in Saccharomyces cerevisiae

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Mutational analysis of 16S and 23S rRNA genes of Thermus thermophilus

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Introducing mutations into a chromosomal rRNA gene using a genetically modified eubacterial host with a single rRNA operon.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Effects of mutagenesis of a conserved base-paired site near the decoding region of Escherichia coli 16 S ribosomal RNA.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Cis-acting, recombination-stimulating activity in a fragment of the ribosomal DNA of S. cerevisiae

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Contribution of 16S rRNA nucleotides forming the 30S subunit A and P sites to translation in Escherichia coli

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Discrimination between defects in elongation fidelity and termination efficiency provides mechanistic insights into translational readthrough

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Mutagenesis of 16S rRNA C1409-G1491 base-pair differentiates between 6'OH and 6'NH3+ aminoglycosides

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2151042

Recombination-stimulating sequences in yeast ribosomal DNA correspond to sequences regulating transcription by RNA polymerase I

19 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18003936

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Interactions of a small RNA with antibiotic and RNA ligands of the 30S subunit

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18003936

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1261/RNA.805208

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18003936%20AND%20SRC:MED&resulttype=core&format=json

release_bwypayvwqzfa7d4rz7ory4isri

26 December 2019

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/bwypayvwqzfa7d4rz7ory4isri

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18003936%20AND%20SRC:MED&resulttype=core&format=json

26 December 2019

1 reference