The C. savignyi genetic map and its integration with the reference sequence facilitates insights into chordate genome evolution (Q41335102)

29 September 2017

The C. savignyi genetic map and its integration with the reference sequence facilitates insights into chordate genome evolution (English)

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29 September 2017

3

1 reference

29 September 2017

Karl W Broman

2

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author name string

Matthew M Hill

1

1 reference

29 September 2017

William C Smith

4

1 reference

29 September 2017

Di Jiang

5

1 reference

29 September 2017

Arend Sidow

6

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29 September 2017

language of work or name

1 reference

2 June 2008

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29 September 2017

1 reference

29 September 2017

18

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29 September 2017

8

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29 September 2017

1369-1379

1 reference

Evolution of genes and genomes on the Drosophila phylogeny

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Comparison of C. elegans and C. briggsae genome sequences reveals extensive conservation of chromosome organization and synteny

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

The medaka draft genome and insights into vertebrate genome evolution

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Multiple whole genome alignments and novel biomedical applications at the VISTA portal

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Extreme genomic variation in a natural population

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Recent human effective population size estimated from linkage disequilibrium

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

High nucleotide polymorphism and rapid decay of linkage disequilibrium in wild populations of Caenorhabditis remanei

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Tunicates and not cephalochordates are the closest living relatives of vertebrates

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Initial sequence of the chimpanzee genome and comparison with the human genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Human, mouse, and rat genome large-scale rearrangements: stability versus speciation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

The neurobiology of the ascidian tadpole larva: recent developments in an ancient chordate.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Reconstructing the genomic architecture of ancestral mammals: lessons from human, mouse, and rat genomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Evolutionary origins of the vertebrate heart: Specification of the cardiac lineage in Ciona intestinalis

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Glocal alignment: finding rearrangements during alignment

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Ciona intestinalis: an emerging model for whole-genome analyses

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

R/qtl: QTL mapping in experimental crosses

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Initial sequencing and comparative analysis of the mouse genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Genome-wide identification of tissue-specific enhancers in the Ciona tadpole

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Testing the neutral theory of molecular evolution with genomic data from Drosophila.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

The fourth chromosome of Drosophila melanogaster: interspersed euchromatic and heterochromatic domains

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Primer3 on the WWW for general users and for biologist programmers

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Construction of multilocus genetic linkage maps in humans

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Basic local alignment search tool

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Chongmague reveals an essential role for laminin-mediated boundary formation in chordate convergence and extension movements

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

The zebrafish gene map defines ancestral vertebrate chromosomes

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Assembly of polymorphic genomes: algorithms and application to Ciona savignyi

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

A genetic linkage map for the zebrafish

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

Cell lineage analysis in ascidian embryos by intracellular injection of a tracer enzyme. III. Up to the tissue restricted stage

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493423

A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers

19 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18519652

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A genetic linkage map of the laboratory rat, Rattus norvegicus

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18519652

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Functional architecture and evolution of transcriptional elements that drive gene coexpression

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18519652

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.078576.108

1 reference

29 September 2017

1 reference

29 September 2017

PubMed publication ID

18519652

1 reference