Differential control of transcription-induced and overall DNA supercoiling by eukaryotic topoisomerases in vitro. (Q41063848)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8599941%20AND%20SRC:MED&resulttype=core&format=json

15 October 2019

title

Differential control of transcription-induced and overall DNA supercoiling by eukaryotic topoisomerases in vitro (English)

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15 October 2019

author name string

Wang Z

series ordinal

1

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15 October 2019

Dröge P

series ordinal

2

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15 October 2019

language of work or name

English

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publication date

1 February 1996

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15 October 2019

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15 October 2019

volume

15

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15 October 2019

page(s)

581-589

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15 October 2019

issue

3

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Transcription-driven site-specific DNA recombination in vitro

15 October 2019

cites work

1 reference

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Transcription and DNA supercoiling

26 September 2017

1 reference

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Protein tracking-induced supercoiling of DNA: a tool to regulate DNA transactions in vivo?

26 September 2017

1 reference

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Modulation of tyrT promoter activity by template supercoiling in vivo

26 September 2017

1 reference

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Chromatin structure and dynamics

26 September 2017

1 reference

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Effects of the pSC101 partition (par) locus on in vivo DNA supercoiling near the plasmid replication origin

26 September 2017

1 reference

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Crystal structure of the site-specific recombinase gamma delta resolvase complexed with a 34 bp cleavage site

26 September 2017

1 reference

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Common themes in assembly and function of eukaryotic transcription complexes

26 September 2017

1 reference

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Regulation of bacterial DNA supercoiling: plasmid linking numbers vary with growth temperature

26 September 2017

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Nucleotide sequence preference at rat liver and wheat germ type 1 DNA topoisomerase breakage sites in duplex SV40 DNA

26 September 2017

1 reference

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Transposon-mediated site-specific recombination in vitro: DNA cleavage and protein-DNA linkage at the recombination site

26 September 2017

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Drosophila DNA topoisomerase I is associated with transcriptionally active regions of the genome

26 September 2017

1 reference

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Action at a distance along a DNA.

26 September 2017

1 reference

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Supercoiling in prokaryotic and eukaryotic DNA: changes in response to topological perturbation of plasmids in E. coli and SV40 in vitro, in nuclei and in CV-1 cells

26 September 2017

1 reference

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The gamma delta resolvase bends the res site into a recombinogenic complex

26 September 2017

1 reference

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Transcription induces gyration of the DNA template in Escherichia coli

26 September 2017

1 reference

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Transcription-dependent DNA supercoiling in yeast DNA topoisomerase mutants

26 September 2017

1 reference

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26 September 2017

DNA supercoiling in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

DNA topoisomerases: nature's solution to the topological ramifications of the double-helix structure of DNA.

26 September 2017

1 reference

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Supercoiling of the DNA template during transcription

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

DNA supercoiling and prokaryotic transcription

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Site-specific recombination by Tn3 resolvase

26 September 2017

1 reference

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Preparation of heavy-atom derivatives using site-directed mutagenesis. Introduction of cysteine residues into gamma delta resolvase

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Direct visualization of supercoiled DNA molecules in solution

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Superhelical torsion in cellular DNA responds directly to environmental and genetic factors

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

The two functional domains of gamma delta resolvase act on the same recombination site: implications for the mechanism of strand exchange

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Bacterial topoisomerases and the control of DNA supercoiling

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Local DNA topology and gene expression: the case of the leu-500 promoter

26 September 2017

1 reference

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DNA topoisomerases: why so many?

26 September 2017

1 reference

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Effect of transcription of yeast chromatin on DNA topology in vivo

26 September 2017

1 reference

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Gyrase-dependent stabilization of pSC101 plasmid inheritance by transcriptionally active promoters

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Transcription-induced conformational change in a topologically closed DNA domain

26 September 2017

1 reference

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Localized torsional tension in the DNA of human cells

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Recombination of nicked DNA knots by gamma delta resolvase suggests a variant model for the mechanism of strand exchange

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Positive supercoiling of DNA greatly diminishes mRNA synthesis in yeast

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Dynamics of DNA supercoiling by transcription in Escherichia coli

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Transcription of human c-myc in permeabilized nuclei is associated with formation of Z-DNA in three discrete regions of the gene

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Activity of a plasmid-borne leu-500 promoter depends on the transcription and translation of an adjacent gene

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

A role for the passage helix in the DNA cleavage reaction of eukaryotic topoisomerase II. A two-site model for enzyme-mediated DNA cleavage

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

DNA gyrase: subunit structure and ATPase activity of the purified enzyme

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Isolation and characterization of the Tn3 resolvase synaptic intermediate

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

The interaction of closed circular DNA with intercalative dyes. I. The superhelix density of SV40 DNA in the presence and absence of dye.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Bacterial chromatin. A new twist to an old story

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

The stereostructure of knots and catenanes produced by phage lambda integrative recombination: implications for mechanism and DNA structure.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

A high affinity topoisomerase I binding sequence is clustered at DNAase I hypersensitive sites in Tetrahymena R-chromatin.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Supercoiling of intracellular DNA can occur in eukaryotic cells.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Transcription generates positively and negatively supercoiled domains in the template.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Transactivation of the Xenopus rRNA gene promoter by its enhancer

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Stabilization of Z DNA in vivo by localized supercoiling.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Simultaneous purification of DNA topoisomerase I and II from eukaryotic cells.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Structure of plectonemically supercoiled DNA.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

The role of DNA topoisomerases in recombination and genome stability: a double-edged sword?

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Effects of transcription and translation on gyrase-mediated DNA cleavage in Escherichia coli

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Rapid induction of c-fos transcription reveals quantitative linkage of RNA polymerase II and DNA topoisomerase I enzyme activities

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Supercoiled DNA energetics and dynamics by computer simulation

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Enzymatic properties of a proteolytically nicked RNA polymerase of bacteriophage T7.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Local domains of supercoiling activate a eukaryotic promoter in vivo

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Transcription-dependent recombination induced by triple-helix formation

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Elevated unconstrained supercoiling of plasmid DNA generated by transcription and translation of the tetracycline resistance gene in eubacteria.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

The site-specific recombination system regulating expression of the type 1 fimbrial subunit gene of Escherichia coli is sensitive to changes in DNA supercoiling.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Transcription complex stability and chromatin dynamics in vivo.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Minimal DNA duplex requirements for topoisomerase I-mediated cleavage in vitro

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=449976

Template supercoiling by a chimera of yeast GAL4 protein and phage T7 RNA polymerase

2 December 2018

1 reference

12 December 2020

Use of site-specific recombination as a probe of DNA structure and metabolism in vivo

1 reference

12 December 2020

Sites of topoisomerase I action on X. laevis ribosomal chromatin: transcriptionally active rDNA has an approximately 200 bp repeating structure

1 reference

12 December 2020

Uncoupling of the recombination and topoisomerase activities of the γδ resolvase by a mutation at the crossover point

1 reference

12 December 2020

Transcription-driven supercoiling of DNA: direct biochemical evidence from in vitro studies

1 reference

12 December 2020

Direct evidence for the effect of transcription on local DNA supercoiling in vivo

1 reference

12 December 2020

Topoisomerases and yeast rRNA transcription: negative supercoiling stimulates initiation and topoisomerase activity is required for elongation

1 reference

12 December 2020

1 reference

12 December 2020

The capture of a DNA double helix by an ATP-dependent protein clamp: a key step in DNA transport by type II DNA topoisomerases

1 reference

12 December 2020

Conformational and thermodynamic properties of supercoiled DNA

1 reference

12 December 2020

On the simultaneous binding of eukaryotic DNA topoisomerase II to a pair of double-stranded DNA helices

1 reference

12 December 2020

DNA transport by a type II DNA topoisomerase: evidence in favor of a two-gate mechanism

1 reference

12 December 2020

10.1002/J.1460-2075.1996.TB00390.X

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8599941%20AND%20SRC:MED&resulttype=core&format=json

15 October 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8599941%20AND%20SRC:MED&resulttype=core&format=json

15 October 2019

1 reference