Network Analyses Reveal Shifts in Transcript Profiles and Metabolites That Accompany the Expression of SUN and an Elongated Tomato Fruit (Q40976178)

25 September 2017

Network Analyses Reveal Shifts in Transcript Profiles and Metabolites That Accompany the Expression of SUN and an Elongated Tomato Fruit (English)

1 reference

25 September 2017

6

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10 June 2020

Josh P Clevenger

1

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10 June 2020

Gustavo Rubén Rodríguez

4

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10 June 2020

Kazuki Saito

8

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10 June 2020

Yusuke Jikumaru

5

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10 June 2020

Esther van der Knaap

10

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10 June 2020

7

Miyako Kusano

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10 June 2020

author name string

Jason Van Houten

2

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10 June 2020

Michelle Blackwood

3

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10 June 2020

Sofia Visa

9

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10 June 2020

language of work or name

English

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publication date

4 May 2015

1 reference

25 September 2017

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10 June 2020

volume

168

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10 June 2020

issue

3

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10 June 2020

page(s)

1164-1178

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Repression of cell proliferation by miR319-regulated TCP4.

10 June 2020

cites work

1 reference

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Mechanical forces as information: an integrated approach to plant and animal development

14 September 2018

1 reference

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What lies beyond the eye: the molecular mechanisms regulating tomato fruit weight and shape

14 September 2018

1 reference

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Regulation of compound leaf development by PHANTASTICA in Medicago truncatula

14 September 2018

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Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

14 September 2018

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Novel phenotypes related to the breeding of purple-fruited tomatoes and effect of peel extracts on human cancer cell proliferation.

14 September 2018

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

14 September 2018

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The emerging function of IQD proteins as scaffolds in cellular signaling and trafficking

14 September 2018

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Patterning of leaf vein networks by convergent auxin transport pathways

14 September 2018

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Genome-wide identification, phylogeny and expression analysis of SUN, OFP and YABBY gene family in tomato.

14 September 2018

1 reference

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Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening.

14 September 2018

1 reference

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Network inference analysis identifies an APRR2-like gene linked to pigment accumulation in tomato and pepper fruits.

14 September 2018

1 reference

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Alteration of the interconversion of pyruvate and malate in the plastid or cytosol of ripening tomato fruit invokes diverse consequences on sugar but similar effects on cellular organic acid, metabolism, and transitory starch accumulation.

14 September 2018

1 reference

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Arabidopsis calmodulin-binding protein IQ67-domain 1 localizes to microtubules and interacts with kinesin light chain-related protein-1

14 September 2018

1 reference

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Role of an esterase in flavor volatile variation within the tomato clade

14 September 2018

1 reference

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Molecular regulation of seed and fruit set.

14 September 2018

1 reference

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Antisense inhibition of the 2-oxoglutarate dehydrogenase complex in tomato demonstrates its importance for plant respiration and during leaf senescence and fruit maturation.

14 September 2018

1 reference

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The tomato genome sequence provides insights into fleshy fruit evolution

14 September 2018

1 reference

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Pleiotropic phenotypes of the sticky peel mutant provide new insight into the role of CUTIN DEFICIENT2 in epidermal cell function in tomato

14 September 2018

1 reference

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Fast gapped-read alignment with Bowtie 2

14 September 2018

1 reference

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Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation

14 September 2018

1 reference

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Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4741315

YUCCA genes are expressed in response to leaf adaxial-abaxial juxtaposition and are required for leaf margin development.

14 September 2018

1 reference

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SUN regulates vegetative and reproductive organ shape by changing cell division patterns.

14 September 2018

1 reference

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High-throughput illumina strand-specific RNA sequencing library preparation

14 September 2018

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Generation of diverse biological forms through combinatorial interactions between tissue polarity and growth

14 September 2018

1 reference

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The role of mechanical forces in plant morphogenesis

14 September 2018

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Antisense inhibition of the iron-sulphur subunit of succinate dehydrogenase enhances photosynthesis and growth in tomato via an organic acid-mediated effect on stomatal aperture

14 September 2018

1 reference

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Differential expression analysis for sequence count data

14 September 2018

1 reference

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The Solanum lycopersicum AUXIN RESPONSE FACTOR 7 (SlARF7) mediates cross-talk between auxin and gibberellin signalling during tomato fruit set and development

14 September 2018

1 reference

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The influence of fruit load on the tomato pericarp metabolome in a Solanum chmielewskii introgression line population

14 September 2018

1 reference

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Polar auxin transport together with aintegumenta and revoluta coordinate early Arabidopsis gynoecium development

14 September 2018

1 reference

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Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development

14 September 2018

1 reference

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Auxin biosynthesis and its role in plant development

14 September 2018

1 reference

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Integrating physical stress, growth, and development

14 September 2018

1 reference

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Fleshy fruit expansion and ripening are regulated by the Tomato SHATTERPROOF gene TAGL1

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4741315

Compensation for systematic cross-contribution improves normalization of mass spectrometry based metabolomics data

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4741315

The role of auxin in style development and apical-basal patterning of the Arabidopsis thaliana gynoecium

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4741315

Calcium and calmodulin-mediated regulation of gene expression in plants

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4741315

Integration of tomato reproductive developmental landmarks and expression profiles, and the effect of SUN on fruit shape

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4741315

Biopython: freely available Python tools for computational molecular biology and bioinformatics

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4741315

Biochemical analyses of indole-3-acetaldoxime-dependent auxin biosynthesis in Arabidopsis

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4741315

Meristematic sculpting in fruit development

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4741315

Aucsia gene silencing causes parthenocarpic fruit development in tomato

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4741315

Control of jasmonate biosynthesis and senescence by miR319 targets

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4741315

The Solanum lycopersicum auxin response factor 7 (SlARF7) regulates auxin signaling during tomato fruit set and development.

14 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4741315

A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit

14 September 2018

1 reference

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Integration of biological networks and gene expression data using Cytoscape

14 September 2018

1 reference

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Arabidopsis JACKDAW and MAGPIE zinc finger proteins delimit asymmetric cell division and stabilize tissue boundaries by restricting SHORT-ROOT action

14 September 2018

1 reference

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Natural variation among Arabidopsis thaliana accessions for transcriptome response to exogenous salicylic acid

14 September 2018

1 reference

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Identification of plant promoter constituents by analysis of local distribution of short sequences

14 September 2018

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KANADI and class III HD-Zip gene families regulate embryo patterning and modulate auxin flow during embryogenesis in Arabidopsis

14 September 2018

1 reference

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Patterning the female side of Arabidopsis: the importance of hormones.

14 September 2018

1 reference

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Genome-wide comparative analysis of the IQD gene families in Arabidopsis thaliana and Oryza sativa

14 September 2018

1 reference

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A genetic framework for fruit patterning in Arabidopsis thaliana

14 September 2018

1 reference

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Noise-robust soft clustering of gene expression time-course data

14 September 2018

1 reference

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Arabidopsis IQD1, a novel calmodulin-binding nuclear protein, stimulates glucosinolate accumulation and plant defense

14 September 2018

1 reference

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Patterns of Dwarf expression and brassinosteroid accumulation in tomato reveal the importance of brassinosteroid synthesis during fruit development

14 September 2018

1 reference

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GC-MS libraries for the rapid identification of metabolites in complex biological samples

14 September 2018

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Camalexin is synthesized from indole-3-acetaldoxime, a key branching point between primary and secondary metabolism in Arabidopsis

14 September 2018

1 reference

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Pollination-, development-, and auxin-specific regulation of gibberellin 3beta-hydroxylase gene expression in pea fruit and seeds

14 September 2018

1 reference

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Fruits: A Developmental Perspective

14 September 2018

1 reference

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Factors controlling cyclin B expression

14 September 2018

1 reference

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Role of arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression

14 September 2018

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Identification of a cis-regulatory region of a gene in Arabidopsis thaliana whose induction by dehydration is mediated by abscisic acid and requires protein synthesis.

14 September 2018

1 reference

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Negative regulation of the Arabidopsis homeotic gene AGAMOUS by the APETALA2 product.

14 September 2018

1 reference

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Involvement of the CYP78A subfamily of cytochrome P450 monooxygenases in protonema growth and gametophore formation in the moss Physcomitrella patens

14 September 2018

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12 December 2020

Immunophilin-like TWISTED DWARF1 Modulates Auxin Efflux Activities ofArabidopsisP-glycoproteins

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12 December 2020

A Novel cis-Acting Element in Promoters of Plant B-Type Cyclin Genes Activates M Phase Specific Transcription

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12 December 2020

Genome organization of the tomato sun locus and characterization of the unusual retrotransposon Rider

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12 December 2020

Identifiers

DOI

10.1104/PP.15.00379

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25941316%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25941316%20AND%20SRC:MED&resulttype=core&format=json