Transcriptome dynamics of a broad host-range cyanophage and its hosts. (Q40888095)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26623542%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

title

Transcriptome dynamics of a broad host-range cyanophage and its hosts (English)

1 reference

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1 March 2020

0 references

1 reference

9

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1 March 2020

Shany Doron

1

1 reference

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Miguel A Hernández-Prieto

1 March 2020

3

1 reference

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1 March 2020

Debbie Lindell

10

1 reference

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1 March 2020

author name string

Ayalla Fedida

2

1 reference

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1 March 2020

Gazalah Sabehi

4

1 reference

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1 March 2020

Iris Karunker

5

1 reference

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1 March 2020

Damir Stazic

6

1 reference

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1 March 2020

Roi Feingersch

7

1 reference

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1 March 2020

Claudia Steglich

8

1 reference

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1 March 2020

Rotem Sorek

11

1 reference

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1 March 2020

publication date

1 December 2015

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1 March 2020

1 reference

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1 March 2020

volume

10

1 reference

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1 March 2020

page(s)

1437-1455

1 reference

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1 March 2020

issue

6

1 reference

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describes a project that uses

1 March 2020

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/5029184

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/ismej.2015.210

0 references

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A novel lineage of myoviruses infecting cyanobacteria is widespread in the oceans

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24 September 2017

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Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism

24 September 2017

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Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability

24 September 2017

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An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803.

24 September 2017

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The phage-host arms race: shaping the evolution of microbes

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Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

24 September 2017

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An antisense RNA in a lytic cyanophage links psbA to a gene encoding a homing endonuclease

24 September 2017

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Bacteriophage resistance mechanisms

24 September 2017

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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

24 September 2017

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The role of interactions between phage and bacterial proteins within the infected cell: a diverse and puzzling interactome

24 September 2017

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Analysis of current and alternative phenol based RNA extraction methodologies for cyanobacteria

24 September 2017

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The Evolution of Viruses in Multi-Host Fitness Landscapes

24 September 2017

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Ecological genomics of marine picocyanobacteria

24 September 2017

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RNA processing and decay in bacteriophage T4.

24 September 2017

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Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria.

24 September 2017

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Restriction Endonuclease Inhibitor IPI* of Bacteriophage T4: A Novel Structure for a Dedicated Target

24 September 2017

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Metagenomic characterization of Chesapeake Bay virioplankton

24 September 2017

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Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution

24 September 2017

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The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

24 September 2017

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Marine cyanophages and light

24 September 2017

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The marine viromes of four oceanic regions

24 September 2017

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Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability

24 September 2017

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Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment

24 September 2017

1 reference

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Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation

24 September 2017

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Genetic diversity among five T4-like bacteriophages

24 September 2017

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Transcription of a 'photosynthetic' T4-type phage during infection of a marine cyanobacterium

24 September 2017

1 reference

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Genomic islands and the ecology and evolution of Prochlorococcus.

24 September 2017

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Computational inference and experimental validation of the nitrogen assimilation regulatory network in cyanobacterium Synechococcus sp. WH 8102.

24 September 2017

1 reference

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Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method

24 September 2017

1 reference

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Resistance to co-occurring phages enables marine synechococcus communities to coexist with cyanophages abundant in seawater.

24 September 2017

1 reference

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Bioinformatic analysis of the genomes of the cyanobacteria Synechocystis sp. PCC 6803 and Synechococcus elongatus PCC 7942 for the presence of peroxiredoxins and their transcript regulation under stress

24 September 2017

1 reference

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Photosynthesis genes in marine viruses yield proteins during host infection

24 September 2017

1 reference

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24 September 2017

1 reference

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Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Physiological diversity and niche adaptation in marine Synechococcus

24 September 2017

1 reference

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Cyanophages infecting the oceanic cyanobacterium Prochlorococcus

24 September 2017

1 reference

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Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage

24 September 2017

1 reference

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Marine ecosystems: bacterial photosynthesis genes in a virus

24 September 2017

1 reference

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The genome of a motile marine Synechococcus

24 September 2017

1 reference

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Genetic diversity and temporal variation in the cyanophage community infecting marine Synechococcus species in Rhode Island's coastal waters

24 September 2017

1 reference

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Clade-specific 16S ribosomal DNA oligonucleotides reveal the predominance of a single marine Synechococcus clade throughout a stratified water column in the Red Sea.

24 September 2017

1 reference

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24 September 2017

Bacteriophage T4 Genome

1 reference

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Snapshot of the genome of the pseudo-T-even bacteriophage RB49.

24 September 2017

1 reference

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Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences.

24 September 2017

1 reference

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Population biology of multihost pathogens

24 September 2017

1 reference

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Diel expression of cell cycle-related genes in synchronized cultures of Prochlorococcus sp. strain PCC 9511.

24 September 2017

1 reference

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Nitrogen control in cyanobacteria.

24 September 2017

1 reference

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Marine viruses and their biogeochemical and ecological effects

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Regulation of ntcA expression and nitrite uptake in the marine Synechococcus sp. strain WH 7803.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Microbial gene identification using interpolated Markov models

24 September 2017

1 reference

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A novel mechanism of virus-virus interactions: bacteriophage P2 Tin protein inhibits phage T4 DNA synthesis by poisoning the T4 single-stranded DNA binding protein, gp32.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Genetic and physiological studies of an Escherichia coli locus that restricts polynucleotide kinase- and RNA ligase-deficient mutants of bacteriophage T4.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Shutoff of host macromolecular synthesis after T-even bacteriophage infection

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Cyanophage tRNAs may have a role in cross-infectivity of oceanic Prochlorococcus and Synechococcus hosts

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Host-dependent differences in abundance, composition and host range of cyanophages from the Red Sea.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Hfq is required for optimal nitrate assimilation in the Cyanobacterium Anabaena sp. strain PCC 7120.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Specialization versus adaptation: two strategies employed by cyanophages to enhance their translation efficiencies

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Antisense RNA protects mRNA from RNase E degradation by RNA-RNA duplex formation during phage infection

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Global changes in cellular gene expression during bacteriophage PRD1 infection

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Control by bacteriophage T4 of two sequential phosphorylations of the alpha subunit of Escherichia coli RNA polymerase

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Genomic island variability facilitates Prochlorococcus-virus coexistence

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Global transcriptional responses of Pseudomonas aeruginosa to phage PRR1 infection

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Prevalence of highly host-specific cyanophages in the estuarine environment.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Novel Role for Phycoerythrin in a Marine Cyanobacterium, Synechococcus Strain DC2.

19 August 2018

1 reference

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Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Genetic richness of vibriophages isolated in a coastal environment.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Cyanobacteria perceive nitrogen status by sensing intracellular 2-oxoglutarate levels

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Overexpression, purification, and characterization of the ADP-ribosyltransferase (gpAlt) of bacteriophage T4: ADP-ribosylation of E. coli RNA polymerase modulates T4 "early" transcription.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029184

Phage-induced change in the stability of mRNAs

19 August 2018

1 reference

12 December 2020

Evidence that TraT interacts with OmpA of Escherichia coli

1 reference

12 December 2020

The bacteriophage T4 anti-sigma factor AsiA is not necessary for the inhibition of early promoters in vivo

1 reference

12 December 2020

Bacteriophage T7 protein kinase phosphorylates RNase E and stabilizes mRNAs synthesized by T7 RNA polymerase

1 reference

12 December 2020

Bacteriophage T4 mutants deficient in alteration and modification of the Escherichia coli RNA polymerase

1 reference

12 December 2020

https://api.crossref.org/works/10.1038%2FISMEJ.2015.210

1 reference

7 January 2021

inferred from DOI database lookup

Culturing the marine cyanobacterium Prochlorococcus

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FISMEJ.2015.210

7 January 2021

inferred from DOI database lookup

Marine cyanophages infecting oceanic and coastal strains of Synechococcus: abundance, morphology, cross-infectivity and growth characteristics

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FISMEJ.2015.210

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/ISMEJ.2015.210

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26623542%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26623542%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference