Posterior predictive checks of coalescent models: P2C2M, an R package (Q40880463)

24 September 2017

Posterior predictive checks of coalescent models: P2C2M, an R package (English)

1 reference

inferred from name or label

24 September 2017

1 reference

7 September 2021

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26032939%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

author name string

Noah M Reid

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26032939%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Gregory L Wheeler

series ordinal

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26032939%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Bryan C Carstens

series ordinal

4

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12 June 2020

publication date

28 May 2015

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Molecular Ecology Resources

24 September 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26032939%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

volume

16

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12 June 2020

issue

1

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12 June 2020

page(s)

193-205

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describes a project that uses

12 June 2020

1 reference

Bayesian estimation of concordance among gene trees.

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Bayesian model adequacy and choice in phylogenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

DensiTree: making sense of sets of phylogenetic trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Detection of implausible phylogenetic inferences using posterior predictive assessment of model fit.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Species delimitation using a combined coalescent and information-theoretic approach: an example from North American Myotis bats

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Model selection as a tool for phylogeographic inference: an example from the willow Salix melanopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Comparing two Bayesian methods for gene tree/species tree reconstruction: simulations with incomplete lineage sorting and horizontal gene transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

A genealogical approach to quantifying lineage divergence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Discordance of species trees with their most likely gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Bayesian phylogenetics with BEAUti and the BEAST 1.7

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Open MPI: Goals, Concept, and Design of a Next Generation MPI Implementation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Philosophy and the practice of Bayesian statistics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Statistical tests of models of DNA substitution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Phylogeography and introgressive hybridization: chipmunks (genus Tamias) in the northern Rocky Mountains

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Ancient hybridization and mitochondrial capture between two species of chipmunks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Bayesian inference of population size history from multiple loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Bayesian inference of species trees from multilocus data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Isolation with migration models for more than two populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Generating samples under a Wright-Fisher neutral model of genetic variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Bayesian inference of phylogeny and its impact on evolutionary biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

On the Genealogy of Large Populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Did the pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshopprers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Full modeling versus summarizing gene-tree uncertainty: method choice and species-tree accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

The influence of gene flow on species tree estimation: a simulation study

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Posterior predictive Bayesian phylogenetic model selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Phybase: an R package for species tree analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Coalescent methods for estimating phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Inferring phylogeny despite incomplete lineage sorting

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Hybridization as an invasion of the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Computational approaches to species phylogeny inference and gene tree reconciliation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Speciation with gene flow could be common

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Inference of population splits and mixtures from genome-wide allele frequency data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Phylogeny estimation of the radiation of western North American chipmunks (Tamias) in the face of introgression using reproductive protein genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Poor fit to the multispecies coalescent is widely detectable in empirical data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Genealogical trees, coalescent theory and the analysis of genetic polymorphisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

DendroPy: a Python library for phylogenetic computing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Comparative Phylogeography of Mesoamerican Highland Rodents: Concerted versus Independent Response to Past Climatic Fluctuations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

Species tree inference by minimizing deep coalescences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

A Mathematical Theory of Evolution, Based on the Conclusions of Dr. J. C. Willis, F.R.S

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12435

21 January 2018

Identifiers

DOI

10.1111/1755-0998.12435

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26032939%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

1 reference