Automated particle picking for low-contrast macromolecules in cryo-electron microscopy (Q40879471)

24 September 2017

Automated particle picking for low-contrast macromolecules in cryo-electron microscopy (English)

1 reference

cryogenic electron microscopy

24 September 2017

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1 reference

6

Joachim Frank

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Jesper Pallesen

object named as

Jesper Pallesen

2

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John L. Rubinstein

object named as

John L Rubinstein

5

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author name string

Robert Langlois

1

1 reference

PMCID

4063204

24 September 2017

Jordan T Ash

3

1 reference

PMCID

4063204

24 September 2017

Danny Nam Ho

4

1 reference

24 September 2017

6 March 2014

1 reference

Journal of Structural Biology

24 September 2017

1 reference

24 September 2017

186

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24 September 2017

1

1 reference

24 September 2017

1-7

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Hepatitis-C-virus-like internal ribosome entry sites displace eIF3 to gain access to the 40S subunit

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

Cryo-EM visualization of the ribosome in termination complex with apo-RF3 and RF1.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

Structure of the mammalian ribosomal 43S preinitiation complex bound to the scanning factor DHX29

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

RELION: implementation of a Bayesian approach to cryo-EM structure determination

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

A Bayesian view on cryo-EM structure determination.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

Reference-free particle selection enhanced with semi-supervised machine learning for cryo-electron microscopy

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

A clarification of the terms used in comparing semi-automated particle selection algorithms in cryo-EM.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

Particle-verification for single-particle, reference-based reconstruction using multivariate data analysis and classification

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

EMAN2: an extensible image processing suite for electron microscopy

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

Historical background: Why is it important to improve automated particle selection methods?

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

Automatic particle selection: results of a comparative study

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy

24 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

24 September 2017

https://pubmed.ncbi.nlm.nih.gov/24607413

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Accurate determination of local defocus and specimen tilt in electron microscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

MRC image processing programs

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

TMaCS: a hybrid template matching and classification system for partially-automated particle selection

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: a case study

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

Experimental evaluation of support vector machine-based and correlation-based approaches to automatic particle selection.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

SIGNATURE: a single-particle selection system for molecular electron microscopy.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

Particle picking by segmentation: a comparative study with SPIDER-based manual particle picking

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

Particle finding in electron micrographs using a fast local correlation algorithm.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4063204

X. On the criterion that a given system of deviations from the probable in the case of a correlated system of variables is such that it can be reasonably supposed to have arisen from random sampling

19 August 2018

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.JSB.2014.03.001

Fully Automated Particle Selection and Verification in Single-Particle Cryo-EM

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.JSB.2014.03.001

A Threshold Selection Method from Gray-Level Histograms

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.JSB.2014.03.001

Least Median of Squares Regression

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.JSB.2014.03.001

Identifiers

DOI

10.1016/J.JSB.2014.03.001

1 reference

24 September 2017

1 reference

24 September 2017

1 reference

PMCID

4063204