Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis (Q40816049)

24 September 2017

Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis (English)

1 reference

Mycobacterium tuberculosis

24 September 2017

0 references

1 reference

1

1 reference

24 September 2017

5

1 reference

24 September 2017

7

1 reference

24 September 2017

9

1 reference

24 September 2017

Michael Zimmermann

4

0 references

Ben C Collins

object named as

Ben C Collins

8

0 references

Ruedi Aebersold

12

object named as

Ruedi Aebersold

1 reference

24 September 2017

11

Uwe Sauer

1 reference

24 September 2017

Christina Ludwig

2

1 reference

24 September 2017

Maria Kogadeeva

3

1 reference

24 September 2017

Martin Gengenbacher

6

1 reference

24 September 2017

Stefan H E Kaufmann

10

1 reference

24 September 2017

18 June 2015

1 reference

24 September 2017

1 reference

24 September 2017

18

1 reference

24 September 2017

96-108

1 reference

24 September 2017

1

1 reference

Ultrahigh performance liquid chromatography-tandem mass spectrometry method for fast and robust quantification of anionic and aromatic metabolites

24 September 2017

1 reference

24 October 2022

https://opencitations.net/index/coci/api/v1/citations/10.1021/AC100101D

High-throughput, accurate mass metabolome profiling of cellular extracts by flow injection-time-of-flight mass spectrometry.

1 reference

24 October 2022

https://opencitations.net/index/coci/api/v1/citations/10.1021/AC201267K

aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data

2 references

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1093/BIOINFORMATICS/BTU200

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

2 references

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1074/MCP.O111.016717

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Tuberculosis - metabolism and respiration in the absence of growth

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Inhibition of respiration by nitric oxide induces a Mycobacterium tuberculosis dormancy program

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Estimation of absolute protein quantities of unlabeled samples by selected reaction monitoring mass spectrometry

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Mycobacterium bovis BCG response regulator essential for hypoxic dormancy

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Rv3133c/dosR is a transcription factor that mediates the hypoxic response of Mycobacterium tuberculosis

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

High-resolution phenotypic profiling defines genes essential for mycobacterial growth and cholesterol catabolism

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Mycobacterium tuberculosis isocitrate lyases 1 and 2 are jointly required for in vivo growth and virulence

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

The Mycobacterium tuberculosis DosR regulon assists in metabolic homeostasis and enables rapid recovery from nonrespiring dormancy

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Role of the methylcitrate cycle in propionate metabolism and detoxification in Mycobacterium smegmatis

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

The implications of proteolytic background for shotgun proteomics

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

What is the total number of protein molecules per cell volume? A call to rethink some published values

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Mass spectrometry-based proteomics

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Finding theKShortest Loopless Paths in a Network

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Increased alanine dehydrogenase activity during dormancy in Mycobacterium smegmatis

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Characterization of phosphofructokinase activity in Mycobacterium tuberculosis reveals that a functional glycolytic carbon flow is necessary to limit the accumulation of toxic metabolic intermediates under hypoxia

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Novel vaccination strategies against tuberculosis.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Menaquinone synthesis is critical for maintaining mycobacterial viability during exponential growth and recovery from non-replicating persistence

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Human T-cell responses to 25 novel antigens encoded by genes of the dormancy regulon of Mycobacterium tuberculosis

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Fumarate reductase activity maintains an energized membrane in anaerobic Mycobacterium tuberculosis.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Persistence of Mycobacterium tuberculosis in macrophages and mice requires the glyoxylate shunt enzyme isocitrate lyase

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Building high-quality assay libraries for targeted analysis of SWATH MS data

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Mycobacterium tuberculosis: success through dormancy

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Nonreplicating persistence of mycobacterium tuberculosis

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Using iRT, a normalized retention time for more targeted measurement of peptides

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Regulation of the Mycobacterium tuberculosis hypoxic response gene encoding α-crystallin

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

2 references

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1038/NBT.2841

Metabolic regulation of mycobacterial growth and antibiotic sensitivity

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Carbon flux rerouting during Mycobacterium tuberculosis growth arrest

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Preparation of stable isotope-incorporated peptide internal standards for field desorption mass spectrometry quantification of peptides in biologic tissue.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Lack of immune responses to Mycobacterium tuberculosis DosR regulon proteins following Mycobacterium bovis BCG vaccination

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Nutrient-starved, non-replicating Mycobacterium tuberculosis requires respiration, ATP synthase and isocitrate lyase for maintenance of ATP homeostasis and viability

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Conserved peptide fragmentation as a benchmarking tool for mass spectrometers and a discriminating feature for targeted proteomics

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

The Mtb proteome library: A resource of assays to quantify the complete proteome of mycobacterium tuberculosis

2 references

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1016/J.CHOM.2013.04.008

An in vitro model for sequential study of shiftdown of Mycobacterium tuberculosis through two stages of nonreplicating persistence

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Options and considerations when selecting a quantitative proteomics strategy

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Tuberculous granulomas are hypoxic in guinea pigs, rabbits, and nonhuman primates

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

The dormancy regulator DosR controls ribosome stability in hypoxic mycobacteria.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

The enduring hypoxic response of Mycobacterium tuberculosis

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

The protonmotive force is required for maintaining ATP homeostasis and viability of hypoxic, nonreplicating Mycobacterium tuberculosis

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Computational prediction of proteotypic peptides for quantitative proteomics.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Critical assessment of proteome-wide label-free absolute abundance estimation strategies

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Global quantification of mammalian gene expression control

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CHOM.2015.06.001

Identifiers

DOI

10.1016/J.CHOM.2015.06.001

1 reference

release_du4wpan5mndf5oouug3vgj7nvu

24 September 2017

1 reference

https://api.fatcat.wiki/v0/release/du4wpan5mndf5oouug3vgj7nvu

Fatcat

reference URL

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference