Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy (Q40773408)

23 September 2017

Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy (English)

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23 September 2017

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Joongbaek Kim

1

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23 September 2017

Shige H Yoshimura

2

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23 September 2017

Kohji Hizume

3

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23 September 2017

Ryosuke L Ohniwa

4

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23 September 2017

Akira Ishihama

5

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23 September 2017

Kunio Takeyasu

6

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23 September 2017

1 April 2004

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23 September 2017

Nucleic Acids Research

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23 September 2017

32

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23 September 2017

6

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23 September 2017

1982-1992

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describes a project that uses

23 September 2017

atomic force microscopy

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Cooperation between complexes that regulate chromatin structure and transcription

inferred from title

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

The KEGG databases at GenomeNet

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

DNA methylation-dependent chromatin fiber compaction in vivo and in vitro: requirement for linker histone

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Isolation of the Escherichia coli nucleoid

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Regulated phase transitions of bacterial chromatin: a non-enzymatic pathway for generic DNA protection

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Functional genomics of Escherichia coli in Japan

24 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Human chromosome structure studied by scanning force microscopy after an enzymatic digestion of the covering cell material.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Analysis of protein synthesis rates after initiation of chromosome replication in Escherichia coli

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

DNA protection by stress-induced biocrystallization

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Chromatin-modifying and -remodeling complexes

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Domain organization and oligomerization among H-NS-like nucleoid-associated proteins in bacteria.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Packaging principle: how DNA methylation and histone acetylation control the transcriptional activity of chromatin

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Chromatin fiber structure: morphology, molecular determinants, structural transitions.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

The crystal structure of Dps, a ferritin homolog that binds and protects DNA

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

The bacterial nucleoid visualized by fluorescence microscopy of cells lysed within agarose: comparison of Escherichia coli and spirochetes of the genus Borrelia

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

The regulation of transcription initiation by integration host factor.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Chromatin Structure: A Repeating Unit of Histones and DNA

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Assembly of chromatin fibers into metaphase chromosomes analyzed by transmission electron microscopy and scanning electron microscopy

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Histonelike proteins of bacteria

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

A three-dimensional approach to mitotic chromosome structure: evidence for a complex hierarchical organization

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Nuclease hypersensitive sites in chromatin

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

The bending of DNA in nucleosomes and its wider implications

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

The structure and assembly of active chromatin

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

In situ nucleoprotein structure involving origin-proximal SV40 DNA control elements

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

iciA, an Escherichia coli gene encoding a specific inhibitor of chromosomal initiation of replication in vitro

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Coralline shape of the bacterial nucleoid after cryofixation

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

The Fis protein: it's not just for DNA inversion anymore

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

E. coli DNA binding protein HU forms nucleosome-like structure with circular double-stranded DNA

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Molecular aspects of the E. coli nucleoid protein, H-NS: a central controller of gene regulatory networks

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

3-A resolution structure of a protein with histone-like properties in prokaryotes.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

On-substrate lysis treatment combined with scanning probe microscopy revealed chromosome structures in eukaryotes and prokaryotes.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Control of transcription by nucleoid proteins

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Yeast centromere DNA is in a unique and highly ordered structure in chromosomes and small circular minichromosomes.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Molecular weights of individual proteins correlate with molecular volumes measured by atomic force microscopy

19 August 2018

1 reference

12 December 2020

Atomic force microscopy sees nucleosome positioning and histone H1-induced compaction in reconstituted chromatin

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12 December 2020

Construction of artificial chromosomes in yeast

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12 December 2020

Nucleosome positioning in vivo and in vitro

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12 December 2020

Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity

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12 December 2020

DNA phase transition promoted by replication initiator

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12 December 2020

Atomic force microscopy with carbon nanotube probe resolves the subunit organization of protein complexes

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKH512

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23 September 2017

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23 September 2017

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